Bsil014838.1
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- -
- Assembly
- GCA_949316355.1
- Location
- OX438536.1:4771660-4778168[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.66 50 4.8 0.9 2 23 43 64 42 64 0.87 2 24 0.058 4.3 8.1 2.1 1 23 99 121 99 121 0.89 3 24 0.00023 0.017 15.7 3.6 1 23 127 150 127 150 0.97 4 24 0.00016 0.012 16.2 2.6 1 23 162 185 162 185 0.96 5 24 0.0038 0.29 11.9 1.3 3 23 194 214 193 214 0.99 6 24 5.6e-06 0.00042 20.8 2.3 1 23 220 242 220 242 0.96 7 24 0.00011 0.0081 16.7 1.4 1 23 248 270 248 270 0.98 8 24 8 5.9e+02 1.4 0.5 1 7 440 446 440 463 0.83 9 24 0.0048 0.36 11.6 0.7 1 21 469 489 469 491 0.83 10 24 0.00011 0.008 16.8 3.1 1 23 497 520 497 520 0.98 11 24 0.00052 0.038 14.6 1.6 1 23 532 555 532 555 0.97 12 24 0.00022 0.017 15.7 0.7 3 23 564 584 562 584 0.97 13 24 4.8e-06 0.00036 21.0 3.5 1 23 590 612 590 612 0.98 14 24 5.4e-06 0.0004 20.8 0.8 1 23 618 640 618 640 0.98 15 24 0.02 1.5 9.6 0.2 3 21 648 666 647 667 0.95 16 24 0.00063 0.047 14.3 0.0 2 23 785 806 784 806 0.94 17 24 0.6 45 5.0 2.8 1 23 812 834 812 834 0.96 18 24 0.0022 0.16 12.6 0.7 1 23 840 862 840 862 0.94 19 24 3.4e-05 0.0025 18.3 4.0 1 23 868 891 868 891 0.98 20 24 0.012 0.89 10.3 1.8 1 23 903 926 903 926 0.92 21 24 0.00029 0.022 15.4 0.5 3 23 937 957 935 957 0.97 22 24 4.9e-07 3.6e-05 24.1 2.7 1 23 963 985 963 985 0.97 23 24 4.6e-06 0.00035 21.0 0.4 1 23 991 1013 991 1013 0.99 24 24 0.044 3.3 8.5 0.1 3 21 1022 1040 1021 1041 0.94
Sequence Information
- Coding Sequence
- ATGATTCCAAATGCTCATGTTAGGCGCAGGCGAAAAAATAAGGAAGACAAGAAAAGGAAGCACAAACGGAAACGCAGACGTAGCACCGAAGAACACCCTCCACCGTTGAAGCTAGAACAGCCGATAAAATGCGACGAATGCGAGGAACACTTCGAAAACAACGTCGATTATGCTTTCCATTCCAAATCCCACGACAAAGATGGCAAGTACACTTGCCATCTCTGTATCAACTTCCGGAACGCTTCCAAGTACCAGATCGAAATGCACGTTAGGGCCCACGAGGGTACCACCAAGTACAAATGCGAGATCTGCAATCGAGGCTTCACAATCAGCACACATGCTATGGAGCACAAGTACTTCCACACTGGAGAGAAGCCGTTTCAGTGCGAGATATGCGGGAAGCATTTCATGTACTCTTGGTTTCTCTCTAGGCACCGTAAATCTACACACTATGAGATCCTGACAGGCAGTCCTCAGGTGAAGTATGATTGCTCTATCTGCCAGAAACACTACGCTACGGCTTCGAGTCTCAGTAGGCACAAGCAGAGCAAGCACAAAAAGATCGACGGTACGGTGCTTTGTGATGTTTGCGGGAAAAGACTCTCTAGCAGGGAGAAGCTAAAATTCCACCTACGCACTCACACAGGCTACAAGCCTCACGCTTGTCACATGTGTCCTAAGAGCTTCTCCAAAAAGGATCAGCTGGTGGAACATGTTCGAGTTCATACTGGCGAAAAGCCTTACATCTGCAAGTTCTGTGGACGTGGCTTCACGCAAAGAACTCCTTTGAAGACTCACGAGAAATCCCATTTGAAACATGAGATTGCTTGCACCATATGCGGTTTGAGTGGGATGTGCTCCCACAGAAACCTACCAAAGCTTGAACAGATGACTCCCACCAGAGAAGAGATGCCTCCTTGTGGGGTCTGCGGGTCCCTGATGCCATGCTCACACGTTCCAAGACTTGATAGAGGAAATGTGAACCCTTGTGCTTGCCCTATTTGCGGGGAAGTGGGACCTTGTGTGCATCTACCAATAAAGATACAAGAGAAAAGTCAAGTGAGAGACGACATGTTATGCTCGATATCGAAACGACAGCAATCAACAGCAAAAACGAGAAGAACCCGcaagaaaaaaaatccagtTAAGGTTCCGGCCAAAGCCAAAAGCAGCAAGCCAAGAAAAAAACGCGTACACGTCGCCCATCCACCTCCAATCAAGCTTGAAGACCCCATACACTGTGATAACTGCTCAGATTCCTACTATAATCACGTAGATTTCGCTTTTCATTCCATCAAACACAGCGAAGACGGGAAATATACCTGCCACATTTGTAACAGCTACAGGAATCAGAAGAAGCATAGCATAGAGATGCACGTTAGAGCCCATGAAGGCTCTACCAAATATAAATGCGAAATTTGCGGGAAGGCCTTCACTATCAACACCTACGCGATAGAACACAAATACTTCCATACCGGCGAGAAACCATTCCAGTGCGAGATCTGCGGGAAACACTTCATGTTCTCCAGGCAGTTGGGATCACATAGACGCACCTCGCATTACGAAATCCTCACGGGAAGTCCTTTGGTGAAGTACGATTGCGATATTTGTAAGAAGCATTACGAGTCGGCATTCGGTCTTAGGAGACACAAACTTACGATCCACAATGACGTGGACCTTTCGGTCATCTGTGAGATCTGTGGGAAGAGGATTTCCACGAAGGAAAAGCTCAAGTTTCACATGAGGACTCATACAGGCGTGAAACCTTACCCGTGTGAGATTTGTGGTAAATGCTTCTCTAAGAAGCATCAGATGATCGAACACACCCGGGTTCATACAGGCGAGAAACCGTACATATGCTCTCATTGTGGAAGGGGATTCTCCCAGCGAACCCCTTTGGTGTTACACATCAGGACGCATACCGGAGAAAGACCGAACTTATGTCGATTCTGTGGTAACGGGTTCATCTCTAAAACGGCGTTAGAGTCACACATGAAGAACTGTTTGCCTCCTTTCCTTGTAGGTGGGAATTTGGCATCGCAGTTATCTCAAATGCCTCAGCTTACTCAGTTATCACAATTACCGCCACCATCACAATTGGTACCACAATCGCCCAATTTATCTCAATCGCCCCAATCACCTCAGTTATCACGAAAATCGGGGGCTGGAAAAGGACCAAACCTCGAGGGAAAACGAAGACGAGGACGAAAAAAGGGGAGCAAAAACAAACCAAAAACGTCTGGGGATGACATCTCAGAAGAATCCAAATCGAAAAAGTCGAGACGCAAGAGCGACAATCCCAGGAAATTGATGATGGCTCATCCGCCTCCCATCGAGCTGAAAGAGCCGATTCCTTGTGATGACTGCGACGAAACTTTCACCAATAATGTAGACTTTGCTTTGCATTCCTTAGTCCACAGTAATGATGGAAAGTATGCTTGTCATATGTGCAATTACAGGAACGTTTCCAAATACCACGTGGAAATGCACGTCAGAGCGCACGAAGGGTCAACCAAATACAAATGCGAGATTTGCGGTAAAGCTTTCATCATCAGTACCCATGCCATAGAACACAAGAATTTTCATACAGGTGAAAAGCCTTTCCAGTGCGAAATTTGCGGCAAGCACTTTATGTTCTCCTGGCACTTGGCTTCTCATAGAAGGACTTCACACTACGAAATCTTAACAGGGAAGCCTTTAGTCAAATTCGATTGTGCCAGTTGCAATAAGCATTACGAGTCAGCCAGTGGGTTGCGACGACACAACATCAAGAAGCACAAAGCCGACGAGATAGACCTGTCAGTTATCTGTGAGATTTGCGGTAAAAGGCTGTCCAGTAAGGAAAAACTGAAATTCCACATCAGGACTCATACTGGCTACAGGCCGCACGCATGTCACGTTTGTCCGAAGAGCTTCTCGAAAAAGGATCAATTGATAGAACACATTAGGACCCATACGGGCGAGAAACCTTACGTCTGCAAGATCTGTGGGAAGGGCTTCGCCCAAAGGACACCTCTGAAGACCCACGAGAAGACTCATCGGTTCACTGATGAGGTGGCTGCGTGTAGAGTCTGtaataatatatacagaaaCAAGGCGGACCTAGAGAACCACGTAAAGTCTTGTTTTGGTGCGCAACTAGCTGCGCAATTGCCGCAAATTCCGCATTTAGCACAGATACCACAAATACCGCAGATACCTTTCGCATACGATTATCCCTTCAAGGTTGAGGATTCTCaggaaaattga
- Protein Sequence
- MIPNAHVRRRRKNKEDKKRKHKRKRRRSTEEHPPPLKLEQPIKCDECEEHFENNVDYAFHSKSHDKDGKYTCHLCINFRNASKYQIEMHVRAHEGTTKYKCEICNRGFTISTHAMEHKYFHTGEKPFQCEICGKHFMYSWFLSRHRKSTHYEILTGSPQVKYDCSICQKHYATASSLSRHKQSKHKKIDGTVLCDVCGKRLSSREKLKFHLRTHTGYKPHACHMCPKSFSKKDQLVEHVRVHTGEKPYICKFCGRGFTQRTPLKTHEKSHLKHEIACTICGLSGMCSHRNLPKLEQMTPTREEMPPCGVCGSLMPCSHVPRLDRGNVNPCACPICGEVGPCVHLPIKIQEKSQVRDDMLCSISKRQQSTAKTRRTRKKKNPVKVPAKAKSSKPRKKRVHVAHPPPIKLEDPIHCDNCSDSYYNHVDFAFHSIKHSEDGKYTCHICNSYRNQKKHSIEMHVRAHEGSTKYKCEICGKAFTINTYAIEHKYFHTGEKPFQCEICGKHFMFSRQLGSHRRTSHYEILTGSPLVKYDCDICKKHYESAFGLRRHKLTIHNDVDLSVICEICGKRISTKEKLKFHMRTHTGVKPYPCEICGKCFSKKHQMIEHTRVHTGEKPYICSHCGRGFSQRTPLVLHIRTHTGERPNLCRFCGNGFISKTALESHMKNCLPPFLVGGNLASQLSQMPQLTQLSQLPPPSQLVPQSPNLSQSPQSPQLSRKSGAGKGPNLEGKRRRGRKKGSKNKPKTSGDDISEESKSKKSRRKSDNPRKLMMAHPPPIELKEPIPCDDCDETFTNNVDFALHSLVHSNDGKYACHMCNYRNVSKYHVEMHVRAHEGSTKYKCEICGKAFIISTHAIEHKNFHTGEKPFQCEICGKHFMFSWHLASHRRTSHYEILTGKPLVKFDCASCNKHYESASGLRRHNIKKHKADEIDLSVICEICGKRLSSKEKLKFHIRTHTGYRPHACHVCPKSFSKKDQLIEHIRTHTGEKPYVCKICGKGFAQRTPLKTHEKTHRFTDEVAACRVCNNIYRNKADLENHVKSCFGAQLAAQLPQIPHLAQIPQIPQIPFAYDYPFKVEDSQEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -