Bsil008234.1
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- -
- Assembly
- GCA_949316355.1
- Location
- OX438532.1:34414006-34421504[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.065 4.9 8.0 1.8 2 23 162 183 161 183 0.96 2 16 1.9e-05 0.0014 19.1 4.0 1 23 188 210 188 210 0.98 3 16 0.00076 0.057 14.1 4.1 1 23 216 238 216 238 0.97 4 16 0.02 1.5 9.6 3.6 1 19 244 262 244 263 0.96 5 16 4.8e-06 0.00036 21.0 0.2 1 23 272 294 272 294 0.98 6 16 0.0023 0.17 12.5 0.0 1 23 541 564 541 564 0.97 7 16 2.7e-05 0.002 18.6 3.6 1 23 570 592 570 592 0.98 8 16 3e-05 0.0023 18.5 3.9 1 23 598 620 598 620 0.97 9 16 5.2e-06 0.00039 20.9 0.8 1 23 626 649 626 649 0.96 10 16 0.0011 0.084 13.5 0.4 1 23 663 685 663 685 0.87 11 16 0.00031 0.023 15.3 3.0 3 23 693 713 691 713 0.97 12 16 1.9e-06 0.00014 22.3 0.5 1 23 720 742 720 742 0.96 13 16 1.2e-05 0.00088 19.8 1.3 1 23 748 770 748 770 0.98 14 16 3.6e-07 2.7e-05 24.5 0.9 3 23 778 798 776 798 0.96 15 16 5.4e-06 0.0004 20.8 0.1 1 23 804 826 804 826 0.99 16 16 0.05 3.7 8.3 0.6 1 23 831 854 831 854 0.97
Sequence Information
- Coding Sequence
- ATGGAGATGGAGAATATTAACGTAAACGCGATCTGCAGGACGTGCAAGTGCATTGCGCCGCACATGCGGTCCATTTTTGAGGAATACGAGAACACACACCAAAGTCCCCGTATTGACGAGATGCTAATGGCCTGTGCTTCTGTACAGGTGATGTGCGGAGACGGATTGCCCAGCCTGATGTGCCAAGTATGCGTGGAGCAGCTGAAAAATGCCTTTGTGTTCAAAAGGCAGGCCGAAAAGGTAGATGCGGGGCTGAGGGAGTACGCGAAAAATCTGAAAGTCAACGAAATCAAACAGGAACTGCAAAATTCAGAGTTTATGGAATCCTTGAATACTCTGAATAGCATCCTCAATGTGGACACAACACCAAAAACGGTACCTAATACCTCACTACAATCAGAAGAGACCAAACCATTGGCACCCCCTCAACCAAAAATAGAGATGGACTACATTCAATTCCTGGAGAACAACCAGATGCTCCTGACTTGCAGAGAATGTGCAAAAATATTCACTACCTTGGAAGGACTGCGCTGCCACAAACGTATCCATTCAGGTGGTATGTACAAATGCAAGCAATGTGACAAGGAGTACACCCGTTTGAACCATCTGCAACGGCATGAGCTCTCCCACTCCAGACGTAAGGTGCATGTTTGCCGTATCTGCAGCAAGACACTCACACGGATGGAGCACCTGAAACGCCATCTAGTGACGCATCTGCGCGAGAAGCCTTTCTCCTGCAAGACCTGCAACCGCGGCTTCAATAGGATCGAGCACCTTCACCATCATGCTCCTAGGTGCAAAGGTGACACTGTTTTCCCTTGCGACGTGTGTAACAAGGCATTCAACCGCGAGGACAGTCTGGAGGTGCACAAGAAGATGCACGACAACCAGCAACCAAAACTGCCGACTATCGAGAACCTAGACAACATCAAGGACTATTATTACCAGATTGACCAGGATATAAACACCACCTTCTCGGACAATGAAGAGGAACCCTCAGATACAGACGATTACTTTGAACCACACGTCGAGGTCACAGAGACCTCTATAGATGAGGACAACAAGCAGAAGGTGGCCGAGGAGATCAACGCATCTGCAGGCGAGCACCATCCCGACGATCAGCCGTTGGAAGGCGGTTCCGGTGGAGGCGCAGCGGTCGCCGTCGAGGATGACAGCATGAGCGACGACGGGTCGCAGGGCGGCGACGACATGGGCGCCAGTTGCGATATGGGCGGCGATGATGTGGGTGGCGGCGACGACAGCGAACCCGAAGAGGGCGGCGAACAGCCGGACGTTGCTGATCAACCGGAAGACGATGAGGACGAGAAGAAGGAGGACGTCAAATTAGAGGACGCCAAGCTGATACAGGCGCTGCTTGATGACGATCAGTTCAACACAAAGGAAGAGGAAGATGAGAACGAGAACTCGGATGCTAATAGTGAAGACAGCGACTATGTGCCCAAGAAAGTCCAAAGACAAAAGCGGGGACGCGGACGTCCGCGCAGAAATCCTGAAGCACCACCCAAAACCAGAAAGCCGAGAGGTGGAGGTAGGGGTAGAGGACGCGGTGGAGGGCGTCCGCCCGCCGTCAAAAAGGAGAAGGACGAAGAATACGGCGAATTCCCTTGTCCGGCGTGCGGGGAGATGTTCAACACGATCACCGGATTGGACAAGCATGCCAGAATCGCCCATGAGGGTCTCAAGGTGCACAAGTGTGGCGTGTGCCAGAAGGAATTCGCCCGGGCGAACCATCTGAAGCGCCACGTGACGACGCACTCGACGTTGAAACCGTTCCGGTGTCAGTCGTGCCCGAAGAGTTTCAACCGGCGCGACCATCTGAACCAGCACGAGAAGCTGCACAACCGGCCCCAAGAGTACGAGTGCGAGGTGTGCCAGAAGCCGTTCAACCGCGCCGACCATCTGGCCAAGCATCGCGCCTCCAAACACGGCATCGGCGACAGGATCAGCGTGATAGGCGAGAAGAAGTACGAATGTCCGATCTGTCACAAGGCGTTCACGACGGAAAAGTACCGAGACGTGCACGTGGCCGCTCACAACGGCACCAAGGAGTACGGTTGCAAGATCTGCGAGAAGACTTTCCTGTCCAAGTCGCACCTGACCGAGCACATGAAGTTCCACAACGACCATTCCAAGAAGTTCCTCTGTTCCGAATGCGGACAGCGGTTCATACGCAACGACTATCTGGTCATACACATGCGCAGACATCGCGGCGAGAAGCCGTTCAAGTGCAAGTTCTGCGGCAAAGGTTTCCCAAGAACGACAGATCTCACTGTTCACGAACGGTATCATACTGGAGAGAAGACTCATTTGTGTACGATTTGCGGTAGAGGTTTTGGAAGGGCGTACAATCTGACCGTGCACATGCGAACCCACACCGGCGAGAAACCCTACCAGTGCACGTATTGCGACGCGGCCTTCGCTCAAGGTAACGATCTGAAGGCCCACATCAGAAGACATACCGGAGAGAGGTTCCAGTGCGAACTGTGCTCAGAAAGCTTCTTAATGGGATATTTGCTCACGCAGCACAAGAGAACGGTTCACGGTCTGAACGTGGTGAGCAACATCCGCCGATTGCAGCCGGTGCACAAGCAGGAGAACCCGGACGAACCACCGCCGATCACTATTCCGTTGCCGAAACCGGTCATCCCGGAGAACGTCATGTTCAACGCTCTGCACGCGAACGCGTTGCACGCCAACGCGCTGCACGCCCAGTTGGCCGTCGCGCAGCTCCATCTGGCGAGAGAGTGA
- Protein Sequence
- MEMENINVNAICRTCKCIAPHMRSIFEEYENTHQSPRIDEMLMACASVQVMCGDGLPSLMCQVCVEQLKNAFVFKRQAEKVDAGLREYAKNLKVNEIKQELQNSEFMESLNTLNSILNVDTTPKTVPNTSLQSEETKPLAPPQPKIEMDYIQFLENNQMLLTCRECAKIFTTLEGLRCHKRIHSGGMYKCKQCDKEYTRLNHLQRHELSHSRRKVHVCRICSKTLTRMEHLKRHLVTHLREKPFSCKTCNRGFNRIEHLHHHAPRCKGDTVFPCDVCNKAFNREDSLEVHKKMHDNQQPKLPTIENLDNIKDYYYQIDQDINTTFSDNEEEPSDTDDYFEPHVEVTETSIDEDNKQKVAEEINASAGEHHPDDQPLEGGSGGGAAVAVEDDSMSDDGSQGGDDMGASCDMGGDDVGGGDDSEPEEGGEQPDVADQPEDDEDEKKEDVKLEDAKLIQALLDDDQFNTKEEEDENENSDANSEDSDYVPKKVQRQKRGRGRPRRNPEAPPKTRKPRGGGRGRGRGGGRPPAVKKEKDEEYGEFPCPACGEMFNTITGLDKHARIAHEGLKVHKCGVCQKEFARANHLKRHVTTHSTLKPFRCQSCPKSFNRRDHLNQHEKLHNRPQEYECEVCQKPFNRADHLAKHRASKHGIGDRISVIGEKKYECPICHKAFTTEKYRDVHVAAHNGTKEYGCKICEKTFLSKSHLTEHMKFHNDHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHIRRHTGERFQCELCSESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKQENPDEPPPITIPLPKPVIPENVMFNALHANALHANALHAQLAVAQLHLARE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -