Bsil000037.1
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- -
- Assembly
- GCA_949316355.1
- Location
- OX438529.1:1281687-1289394[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00037 0.028 15.0 0.5 2 20 169 187 168 189 0.93 2 18 4.1e-05 0.003 18.1 1.3 1 23 199 221 199 221 0.99 3 18 8.3e-05 0.0062 17.1 2.7 1 19 227 245 227 250 0.91 4 18 7e-06 0.00052 20.5 1.7 1 23 256 278 256 278 0.99 5 18 0.053 3.9 8.3 0.7 1 23 284 306 284 306 0.97 6 18 0.56 42 5.1 1.5 5 20 328 343 327 345 0.91 7 18 2.7e-05 0.002 18.6 2.1 3 23 367 387 365 387 0.95 8 18 0.00013 0.0098 16.5 1.1 1 23 393 415 393 415 0.99 9 18 0.00016 0.012 16.2 6.1 1 23 421 443 421 443 0.98 10 18 1.4e-05 0.0011 19.5 0.1 1 23 449 471 449 471 0.98 11 18 0.5 38 5.2 6.0 1 11 477 487 477 505 0.72 12 18 3.2e-05 0.0024 18.4 6.3 1 23 510 532 510 532 0.99 13 18 0.023 1.7 9.4 0.5 1 19 551 569 551 571 0.90 14 18 5.3e-06 0.00039 20.9 0.2 1 23 590 612 590 612 0.96 15 18 0.0018 0.14 12.9 0.6 1 23 618 640 618 640 0.95 16 18 1.5e-05 0.0011 19.4 5.0 1 23 646 668 646 668 0.98 17 18 9.6e-06 0.00072 20.0 0.0 1 23 674 696 674 696 0.98 18 18 0.0001 0.0078 16.8 1.9 1 23 702 724 702 724 0.98
Sequence Information
- Coding Sequence
- ATGGATGGAACTTTAACAATCAAAGATTTTCCTAGTATTTGTAGGATATGTATGACAAGAGGTGATCTTAAGCCCTTTACAAGACAAGAACTTGTAGACCTGTTTAAAAACATCACCGCCATAGAGTTGGACTTCGAGACATTGCCTCAAAATGTCTGTAGCTTATGTACAAATACTTTGGAGACCATTTTAGAATTTATCAACCAGTCAAAATCTAGTGATGTATGTCTCAGGGAGATCTATGGAAAAACTAAGTTTGAAgtagaagatgaagaagaagagGTGGATGACTTCCTAGATGATAATGTCTTAGATCCAGATTGGGGGTCTGAAGATGAAAAAGACAAGAAAAAAGCTGTCAAAAATGAAGAGGCTATAGAGGATATAAAGGAGGAGGATGATAGTGATACTTCAATAAAATCTGAGACAAGGCCACGCAAAAGACGACGAAAACTTGCCAGACAGAAATCTGACTCTGTAGTCAAGGTGTCTCGCAGACCTGTGCAATGTAATGTTTGTAATGTTACATTCAGCCGTAGAAAGGAGTATAACAAACACAAAATGGAAAATCCTGAATGTAATCAAACTAAAGAGTATGAGTGTGATACTTGTGGTATGAAGTTTCCTTATAGGTATAAAATGGAGACACATATGAAGTCACATAATGAAGACACACCATATGAATGCAAGgtatgTGGTAAAAAGTTTAAATTTCAACATAATGTCAGGAGGCATGACAAGATAGCTCACAAAGGACTGAAACCATTCAAATGTGACATCTGTGGAAAAGAATTTACGACGTTGTACACAAAAAATGACCACATGAACAAGCACACAGGAGCGCACCCTTACGAGTGCAAAATCTGCGGAATGTGGTTCCAGACTTTCGCCAATATCAGTCAACACAGGAAGCAACACGCGGACAATCCAGCCAGaaaaCGCGATCCTCGCGCCAACACCCAGAAGGAGTACTTTGTGTGCACGTGTGGCAAGAAATTCTACAACCAGCAATGTTACGAACAACATAAGGAACAGCCATGCGAAACCACCGAACCGAAACATCGTAAACCAAATCCCAACTCTATCAGAGAGCATCTGTGTTCAATTTGTGGAAAGACATTTAGAGCCAAGAGCTTGCTAGAACAACATTTCAGGCTTCACACTGGCGAGAAACCTTTCAAATGCGAGTATTGCGAGAAATCATTCAGGCTGATGCAAAAGATGGAGGAGCACATAAGGGTGCACACGGGGGAGAAGCCGTATCAGTGCGAACGCTGTCACATGTCTTTCAGACAGAGGGCTCATTTGAAAACTCATTCGCTCACACATACTGGTGAGAAACCGTACGCCTGTGGGATGTGCGGTAATAGGTTTGTCAGTGCTGGAAATATGAGGACTCATATGAGGATTCACACTGGTGAAACGCCTTATGTGTGCCATGTGTGCGGGAAGAGTTTCCATGAGAAGAaGTTTACAGCTGCATACACAAAGAACGATCACATGAATAAACATACTGGAGCTAGACCTTATGTGTGTAAGATATGTGGAGAGTCTTTCCAGACGTTTTCACATTTTAGCCATCACAGGCGGACGCACGTCGAGCAGTATGTGGTAAAAAAGAAAATGGTATCCAACCAGCGGAACATGAACTTTCTGTGCCCCATTTGCGGGCGATCCTTCCTCTCCAAGTATTACTTCGACAAACACTCGGTGATGCCGTGCGAGAAGAAGATCAAAGAGAAAGGGTCGGTGCGGCAGTCGAAGGATTACCTCTGCTCCACCTGTGGCAAGACATTCATAGCGCCCAGCTACCTGGAGCAACACATCAGGTTGCATACCGGAGAAAAACCGTACAAATGCGACACTTGTGGGAAAGCTTTCAGACTGCTGCAAACGATGGTAGGCCACAAGAAAATCCACACCGGCGAGAAGCCGTTCGAATGTGACGTATGCCACACTCGCTTCCGTCAAAGGGCGCACCTGAAAACCCACCTGTTGACGCACACGGGGGAGAAGCCGTACGAGTGCGGCGTGTGCGGCAACCGTTTCGTTAGCGCCGGCAACTTGAGAGCACACGCCCGGATCCACACTGGGGAGACTCCGTACGTGTGCCCCGTCTGCCAGAAGGGCTTCCACGAGAAGAGCGGCTACAACAAGCACGTGAAGAAACACAAGGCGCACGGGGAAGTCATGCACCAGCCTACCAACACTGGTTTACCAACCCACTATCGTCACTCGTCACCCGTTCATATTATTCTGGAGCAGGATCAGATGAAGATGGATGCTATTCAGTATAATTAG
- Protein Sequence
- MDGTLTIKDFPSICRICMTRGDLKPFTRQELVDLFKNITAIELDFETLPQNVCSLCTNTLETILEFINQSKSSDVCLREIYGKTKFEVEDEEEEVDDFLDDNVLDPDWGSEDEKDKKKAVKNEEAIEDIKEEDDSDTSIKSETRPRKRRRKLARQKSDSVVKVSRRPVQCNVCNVTFSRRKEYNKHKMENPECNQTKEYECDTCGMKFPYRYKMETHMKSHNEDTPYECKVCGKKFKFQHNVRRHDKIAHKGLKPFKCDICGKEFTTLYTKNDHMNKHTGAHPYECKICGMWFQTFANISQHRKQHADNPARKRDPRANTQKEYFVCTCGKKFYNQQCYEQHKEQPCETTEPKHRKPNPNSIREHLCSICGKTFRAKSLLEQHFRLHTGEKPFKCEYCEKSFRLMQKMEEHIRVHTGEKPYQCERCHMSFRQRAHLKTHSLTHTGEKPYACGMCGNRFVSAGNMRTHMRIHTGETPYVCHVCGKSFHEKKFTAAYTKNDHMNKHTGARPYVCKICGESFQTFSHFSHHRRTHVEQYVVKKKMVSNQRNMNFLCPICGRSFLSKYYFDKHSVMPCEKKIKEKGSVRQSKDYLCSTCGKTFIAPSYLEQHIRLHTGEKPYKCDTCGKAFRLLQTMVGHKKIHTGEKPFECDVCHTRFRQRAHLKTHLLTHTGEKPYECGVCGNRFVSAGNLRAHARIHTGETPYVCPVCQKGFHEKSGYNKHVKKHKAHGEVMHQPTNTGLPTHYRHSSPVHIILEQDQMKMDAIQYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -