Bsil014849.1
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- -
- Assembly
- GCA_949316355.1
- Location
- OX438536.1:4830643-4837289[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00099 0.074 13.7 2.8 2 23 97 119 96 119 0.96 2 22 0.013 0.98 10.2 0.3 1 23 143 165 143 165 0.98 3 22 4.7 3.5e+02 2.1 1.1 1 23 169 191 169 191 0.85 4 22 0.0034 0.25 12.0 0.4 1 23 197 220 197 220 0.96 5 22 9.2e-05 0.0069 17.0 3.9 1 23 226 248 226 248 0.96 6 22 0.034 2.5 8.9 0.2 1 23 254 277 254 277 0.91 7 22 2e-05 0.0015 19.0 3.4 2 23 289 311 288 311 0.97 8 22 5.6e-05 0.0042 17.6 2.0 3 23 325 345 323 345 0.96 9 22 4.6e-05 0.0034 17.9 0.8 1 23 351 373 351 373 0.98 10 22 8.8e-07 6.6e-05 23.3 0.2 1 23 379 401 379 401 0.99 11 22 0.00066 0.049 14.3 0.4 1 21 407 427 407 428 0.95 12 22 0.056 4.2 8.2 1.4 1 23 521 544 521 544 0.96 13 22 0.044 3.3 8.5 0.2 1 23 563 586 563 586 0.97 14 22 0.00038 0.028 15.0 2.9 1 23 590 612 590 612 0.99 15 22 0.0002 0.015 15.9 2.0 1 23 618 641 618 641 0.97 16 22 0.0033 0.25 12.0 1.0 1 23 647 669 647 669 0.90 17 22 0.0017 0.13 13.0 0.8 1 23 675 698 675 698 0.96 18 22 0.00016 0.012 16.2 1.1 2 23 710 732 709 732 0.96 19 22 2.2e-05 0.0016 18.9 1.0 3 23 746 766 744 766 0.96 20 22 0.00017 0.012 16.1 1.6 1 23 772 794 772 794 0.95 21 22 3.6e-07 2.7e-05 24.5 0.9 1 23 800 822 800 822 0.98 22 22 0.031 2.3 9.0 0.1 1 21 828 848 828 849 0.95
Sequence Information
- Coding Sequence
- ATGGACAGGAGCGTAGCTAGGAAAGGTAGGACTGTTCCTATGGACGTACTGAttgaggaagaagaagaagaagacgacGATGTAGCTGTAAAATACGACTCTGAACCGGACTGGAAGCCACCcaccaaaaaattgaaaaccaaATTGAGAACGAAGAAGAGGAAAGCTGGTCCGAAAAAAGAATCCACAGCCATAAAAAAAGAACCTAAAGAAAAACGTACACCCAGAAAATCCACCCCCAAAAATCAGGCATACCGCGTGAAACCGAACCAAAAAGCGAGAAGCTGGTGCTGCAAACTTTGCTTCGAGGAGTTTGAAACCCGGAAGAACCTAGAGGACCACAGAAGGACCATGCACGATGACGGCGATACGATCGATCCAGAAAGCACCTTCGAGCCTTACTCATTCGACGAGGTCCTCGAATTCTACACTTGCAACACCTGCTCGGCTGAGTTCCAGCTCAAGGAAGAGGTGGAGAAGCATCTGGAGACCCACGAGGAGAAGTACGACTGTCAGGTGTGCGGCGAGACCATGAAGGGCGCACTCAACTTCTCCTGCCACATGCAACAGCACAGGGAGGACAACAACTTCCCATGCCCCCTCTGTCCCCATATCACCAACCGGAAGTCCGCCATGTTGACCCACATATCGAGGTTGCACTTCCGGAAGTACGATTTTCAATGCAGGATGTGCGGCAAGTGCTTCAACGACGCGTCGACGTTCAAGGAGCACGAAAACTTCCATCTGGGCATCAAGCCGTTCATCTGCATCGTGTGCAGTAGGGAGTTTATATACTCCAGATACCTCATCGCGCACCAAATCCGAAACCATAGGGTTAGAGTGCTGGACAAGGACTCTAAGACGCAGTGTCATATGTGCACGAAATTCTTCGCCAGGAGCGAGACTCTGGTGAAGCACATGTTGACGAAGCACATGACGTTTCACGAGGGCCCTCATGAGAAGAAGCACCTGTGCGACGTTTGCGGCCAGGGATTTTCGCGTACTGACAAGCTAAAGATCCACTACAGGAAGCATACCGGCGAGAAGCCGTATTCGTGCGTTTATTGCAGCAAGAGCTTCATTAAACGCGACTATTTGATCATGCATGAACGCATCCACAACGGAGAAAAACCGTACGTTTGCGACTATTGCGGCAAGAGCTTCAATCAGGGTGCGCCACTTAGGATCCATATGCGCAGCCATACCGGCGAGAGGCCCTACAAATGCCCGCACTGTGAGACCGGTTGCATCTCCAAGGGGGCGCTCAATGCACATGTCAAAAGCTGTCTTAGTACCTTTCAACCGctGTACTTCCCCGACTTCGAGGTGGAGATGAAGATAGATGAGGACGTCTACGACGTAGCTACAGCCTACCAACGCGAGAAAAAGCACTCCCCGAAAACCACACCCACGAAGAAGAAAAAAGTGAAAGAAGAAGACGAAGACGACGAAGATAAAGAATACGTACCGCCAAACTACGCGAAGAAGACTAAAAAAACGAAGAGCCCGAAGAGGCCTAAGACCGAAAGTCCGAAGGTGAAAAAACAGGAACACAAGGTATTTACTTGCAGACGCTGTCTGGCAGAGTTCAGTTCCAGAAAAGGGCTGACAGATCACACGAAGTTATACCATAACGATGACTCCAAAGAAGAACACACTTTTAAGTATGATGAAGATCAAGACCTTTATACCTGCAGCACTTGCTCTGCAGAATACCAAACGAAGGAAGAGGTAGAAGAACACATCTCCAAGGTACACGAAGAATTCTATACGTGTGAGCAATGCAACCATACCTCTACAAAAGCCTACAACTTCGCTGTTCACATGAAAAGTCATTCAAACGAGGAAAGCTATTCATGCCCTTTGTGTAACTATACCACTCCAAGGAGGACGTGCTTGCAGAACCACATCAACAGGGTGCACTACCACAAGTTCTACTACACCTGTCATACTTGCGGCAAAGGATTCAACGACCCCGCGATATTCAAGGAGCATAACAACGAGCATCTGGGTATCAAACCGTTCATATGCGTCGTGTGCAACAAAGACTTCGTCTATTCTCGATACCTGTTGATACATCAGACAAAGTACCACACTGTTCACATCGAAGGCACGTTGCACAAAACCCAGTGCAGCATCTGCCTGAAGGTGTTCAGCAAAATCTCGACGTTGTTGAAGCATATCACCACCAAACATGGAGAAAGCAAAGAAGAGAAGATCGAAAAACGGCATCTGTGCGACATGTGCGGTAAGGGCTTCGGAACCTCTGACAAGCTGAAGATCCACTATAGGATTCACACTGGAGACAAGCCGTTCTTGTGCAGGTACTGCGAGAAGAAGTTCTCCAAGAAAGACTACTTGGTGATGCACGAACGGGTCCATACTGGCGAGAAGCCTTATCCATGCGAATACTGCGGGAAGTGCTTCAACCAAGCGGCTTCGTTGAGGATTCACACCAGGGGGCACACCGGGGAAAGACCGTACATTTGTCAGTTCTGCAATGGCGGGTATATATCCAGAGGGTCTCTCAATTTGCATATGAAAATTTGCAATGGAATCGCGGTGGCTTGA
- Protein Sequence
- MDRSVARKGRTVPMDVLIEEEEEEDDDVAVKYDSEPDWKPPTKKLKTKLRTKKRKAGPKKESTAIKKEPKEKRTPRKSTPKNQAYRVKPNQKARSWCCKLCFEEFETRKNLEDHRRTMHDDGDTIDPESTFEPYSFDEVLEFYTCNTCSAEFQLKEEVEKHLETHEEKYDCQVCGETMKGALNFSCHMQQHREDNNFPCPLCPHITNRKSAMLTHISRLHFRKYDFQCRMCGKCFNDASTFKEHENFHLGIKPFICIVCSREFIYSRYLIAHQIRNHRVRVLDKDSKTQCHMCTKFFARSETLVKHMLTKHMTFHEGPHEKKHLCDVCGQGFSRTDKLKIHYRKHTGEKPYSCVYCSKSFIKRDYLIMHERIHNGEKPYVCDYCGKSFNQGAPLRIHMRSHTGERPYKCPHCETGCISKGALNAHVKSCLSTFQPLYFPDFEVEMKIDEDVYDVATAYQREKKHSPKTTPTKKKKVKEEDEDDEDKEYVPPNYAKKTKKTKSPKRPKTESPKVKKQEHKVFTCRRCLAEFSSRKGLTDHTKLYHNDDSKEEHTFKYDEDQDLYTCSTCSAEYQTKEEVEEHISKVHEEFYTCEQCNHTSTKAYNFAVHMKSHSNEESYSCPLCNYTTPRRTCLQNHINRVHYHKFYYTCHTCGKGFNDPAIFKEHNNEHLGIKPFICVVCNKDFVYSRYLLIHQTKYHTVHIEGTLHKTQCSICLKVFSKISTLLKHITTKHGESKEEKIEKRHLCDMCGKGFGTSDKLKIHYRIHTGDKPFLCRYCEKKFSKKDYLVMHERVHTGEKPYPCEYCGKCFNQAASLRIHTRGHTGERPYICQFCNGGYISRGSLNLHMKICNGIAVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -