Bsil014819.1
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- -
- Assembly
- GCA_949316355.1
- Location
- OX438536.1:4669491-4673087[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0068 0.51 11.1 0.5 5 23 2 21 1 21 0.93 2 23 0.0022 0.17 12.6 0.9 1 23 26 49 26 49 0.89 3 23 1.2e-05 0.00088 19.8 1.4 1 23 55 78 55 78 0.97 4 23 0.026 2 9.2 1.1 3 23 86 107 85 107 0.97 5 23 2e-05 0.0015 19.1 1.5 1 23 112 134 112 134 0.97 6 23 0.055 4.1 8.2 5.6 1 21 139 159 139 160 0.94 7 23 4.8e-05 0.0036 17.8 0.5 1 23 167 189 167 189 0.98 8 23 0.00016 0.012 16.2 0.5 1 23 196 218 196 218 0.98 9 23 0.00012 0.0092 16.6 0.2 1 23 224 246 224 246 0.99 10 23 5.7e-07 4.3e-05 23.9 2.6 1 23 252 274 252 274 0.98 11 23 0.0013 0.095 13.4 1.7 2 23 309 331 308 331 0.93 12 23 1.4e-05 0.0011 19.5 0.1 1 23 336 359 336 359 0.92 13 23 0.01 0.76 10.5 4.2 1 23 365 388 365 388 0.94 14 23 0.055 4.1 8.2 1.8 1 23 412 435 412 435 0.97 15 23 1.2e-05 0.00088 19.8 1.0 1 23 440 463 440 463 0.95 16 23 1.3e-05 0.001 19.6 1.1 1 23 469 492 469 492 0.98 17 23 0.0051 0.38 11.5 3.9 1 23 498 521 498 521 0.95 18 23 3.1e-05 0.0023 18.4 0.6 1 23 526 548 526 548 0.98 19 23 0.2 15 6.5 5.0 1 23 553 575 553 575 0.98 20 23 1.1e-05 0.00086 19.8 1.8 1 23 581 603 581 603 0.98 21 23 1.2e-07 9.1e-06 26.0 0.2 1 23 609 631 609 631 0.99 22 23 2.1e-06 0.00016 22.1 0.5 1 23 637 659 637 659 0.98 23 23 0.0012 0.093 13.4 2.7 1 21 665 685 665 686 0.94
Sequence Information
- Coding Sequence
- ATGGAGTGCTCCAAAGTTTTTCGGTCCAGAAGATATTTAAACAGCCATAAAAAAGCAGTTCATGTTCCTGATATACACCCTTGCAATGTATGTGGAAAAACCTTCAAACTACTAAGcatattaaaaaatcataaggcGTATGCTCACACAGACGAACGAAATTACAAATGTGATACGTGCGGGAGTGAGTTCAAAACCAAGTCGACTTTGAAAGTACATGAAAAACGCGTGCATCTGAGAaagatggaaaagttctgtCAACAATGCGGAGAAGGTTTCATTTTGGACTGCGAATTGCGCGATCATCAAAGGATCAAACATGACAAGATTCTCTACAGCTGCTGCGACTGCGACAAGAAGTTCGTGTCCAAGTCCGGTCTCTGGTTGCATTTGGAAAACCATCGAGATACCACGTACAACTGTTCATTCTGTATGAAAACCTTCAAGTTCAGGAGGCAGCTACGCAGACATGTATGCAAGCAAAAAGATAGCATGAAATATGTTTGCGATAGATGCGGCAAAGAGTTGACATCGAAGAAGGCGATGAAAAATCACATAAACATGCACAAATATGGTCAGATGAAGTATGTTTGTGACAGATGCAGCAAAGAACTGACTTCCAAGAAGGCTTTGAAGGATCACATGAATGCTCACGATGGAATCAAACCGTACAAATGTGACGTTTGCTCTGAATCGTTGGCGTCTTCGAGTACTTTACTCGTTCACAAAAGGATACACACTGGGGAAAAACCTTATGCTTGTTCGGTGTGTGAAAAACGGTTCAGACAGAAGAATTCATTGACTCGTCATACGAGAACTCATGGGGGCGAGTTGCCATATAGCATAAAACTAGAGGCTTGGATCGTACCTGTAAAAGAAGAACTGGAATTCAACATTGACAATCGCTTGAAATCGGAAGTGATTCAATGTATGAAGTGTTCAAAAACCTTCAAAACTAAGAAGCGGTTACGTTATCATGAAGAAGTAGTTCATAATCCTGAGATATACGAATGCGGGGTCTGTGGGAAGCCTTTCAAGACATCAAGATCACTAGAAGATCATGAGATATATGCTCACACTGATGACCGTAACTACAAATGTGATTTGTGCGacaaacatttcaaatggaAAAAGTATCTGAGAGATCATAAGATAAACACgcatttgaaatatatcgaCAAACGAGGCATGAAATCAGACGGTCAACATAGTGACAATGACGAGATGATATTCTTCGACTGCAACGAATGCTCTAAAGTGTCTCTAACGAAGAGACAATTATATTACCATAGAAAAACAGTTCACGGTCCAGACATCTACTCGTGTGATGTATGCGGGAAGACATTCAAGCTATCAGACTTTCTAAAAAAACATAAAGAATCTGCTCATTCAGACGAACGTAATTACAAATGCGACGATTGTGAAGCCCGGTTCAAAACGAGGACTGCTTTGGTTAAACACAAAAAAACCATACATTTGAAGTCGTACGAGCATTTCTGTGAACAGtgcaaaaaaggttttttttcgCGCACTCAACTGGTTGACCATAAAAGAGTCAAGCATGATAAGATACTTTATAGTTGTAGCGTATGCAAGAAAGAGTTTGGATCAAGATCTGGTTTGTCGCTGCATATGGAAAAACACGAAGATGCACAGTACAGCTGTCCACTCTGTATGAGAGTGTTCCAGTTCAAAAGACAGATGAGCAGACACACATGTAAGCATAAGATTCAAATGAAGTACGTTTGCGATAAATGTGGCAAAGAGTTATGTTCGAAGATGTCTCTGAAAAAACACATAAATATACACGAAGGAATTAAACCGTTTAAATGTGATGTTTGTGGTGAGACGCTGGCTACTTCATCCAATTTGAAGATCCACATGAGAATACATACAGATGAAAAACCCTATGCCTGCACAATCTGCCAGAAGCGTTTCAGGCAAAAACCTCCATTGACTCTTCATATGAGAATTCATACTGGGGAGCTACCCTACCACTGTGAAGTGTGCAATAGAAATTTCATCAGTAAAGCTGCATTGAAAAATCACAAATGCAGAGGACCGATTATAGAAACGGACACAGATGGGACAGACAGTGGATGA
- Protein Sequence
- MECSKVFRSRRYLNSHKKAVHVPDIHPCNVCGKTFKLLSILKNHKAYAHTDERNYKCDTCGSEFKTKSTLKVHEKRVHLRKMEKFCQQCGEGFILDCELRDHQRIKHDKILYSCCDCDKKFVSKSGLWLHLENHRDTTYNCSFCMKTFKFRRQLRRHVCKQKDSMKYVCDRCGKELTSKKAMKNHINMHKYGQMKYVCDRCSKELTSKKALKDHMNAHDGIKPYKCDVCSESLASSSTLLVHKRIHTGEKPYACSVCEKRFRQKNSLTRHTRTHGGELPYSIKLEAWIVPVKEELEFNIDNRLKSEVIQCMKCSKTFKTKKRLRYHEEVVHNPEIYECGVCGKPFKTSRSLEDHEIYAHTDDRNYKCDLCDKHFKWKKYLRDHKINTHLKYIDKRGMKSDGQHSDNDEMIFFDCNECSKVSLTKRQLYYHRKTVHGPDIYSCDVCGKTFKLSDFLKKHKESAHSDERNYKCDDCEARFKTRTALVKHKKTIHLKSYEHFCEQCKKGFFSRTQLVDHKRVKHDKILYSCSVCKKEFGSRSGLSLHMEKHEDAQYSCPLCMRVFQFKRQMSRHTCKHKIQMKYVCDKCGKELCSKMSLKKHINIHEGIKPFKCDVCGETLATSSNLKIHMRIHTDEKPYACTICQKRFRQKPPLTLHMRIHTGELPYHCEVCNRNFISKAALKNHKCRGPIIETDTDGTDSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -