Bsil014824.1
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- Znf296
- Assembly
- GCA_949316355.1
- Location
- OX438536.1:4681426-4688954[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.0041 0.31 11.8 0.1 2 23 43 65 42 65 0.95 2 34 0.079 5.9 7.7 1.0 1 20 70 89 70 93 0.86 3 34 0.0001 0.0077 16.8 0.2 1 23 99 122 99 122 0.97 4 34 0.00026 0.02 15.5 0.2 1 23 124 147 124 147 0.91 5 34 8.3e-05 0.0062 17.1 4.5 1 23 153 176 153 176 0.97 6 34 0.0016 0.12 13.0 0.6 1 23 181 204 181 204 0.91 7 34 0.004 0.3 11.8 0.4 1 23 210 233 210 233 0.98 8 34 0.00097 0.072 13.7 0.7 3 23 241 262 239 262 0.96 9 34 0.03 2.2 9.0 0.2 2 22 268 288 267 290 0.88 10 34 0.0001 0.0076 16.8 1.4 1 23 295 318 295 318 0.96 11 34 4.4e-06 0.00033 21.1 0.2 1 23 324 346 324 346 0.98 12 34 9.1e-07 6.8e-05 23.3 2.1 1 23 352 374 352 374 0.99 13 34 3.4e-06 0.00025 21.5 1.9 1 23 380 402 380 402 0.97 14 34 6.3e-05 0.0047 17.5 1.9 1 23 534 557 534 557 0.97 15 34 0.015 1.1 10.0 2.6 2 23 564 586 563 586 0.91 16 34 0.00027 0.02 15.5 2.1 1 23 591 613 591 613 0.98 17 34 0.008 0.59 10.9 1.5 1 23 620 643 620 643 0.97 18 34 0.74 55 4.7 1.0 2 23 650 668 649 668 0.80 19 34 0.00086 0.064 13.9 2.7 1 23 674 696 674 696 0.98 20 34 1.9e-07 1.4e-05 25.4 1.6 1 23 702 724 702 724 0.98 21 34 0.005 0.37 11.5 1.0 2 23 754 775 753 775 0.97 22 34 2.6e-06 0.00019 21.8 0.9 1 23 781 803 781 803 0.97 23 34 0.00067 0.05 14.2 0.3 1 20 809 828 809 830 0.94 24 34 0.084 6.2 7.6 4.2 2 23 838 860 837 860 0.88 25 34 0.00056 0.042 14.5 1.6 1 23 865 888 865 888 0.95 26 34 3 2.2e+02 2.8 4.2 3 23 896 917 894 917 0.89 27 34 0.016 1.2 9.9 7.3 1 23 922 944 922 944 0.98 28 34 0.0016 0.12 13.1 1.3 1 23 951 974 951 974 0.98 29 34 0.087 6.5 7.6 0.2 2 13 981 992 980 999 0.80 30 34 3.9e-05 0.0029 18.1 1.1 1 23 1005 1027 1005 1027 0.98 31 34 1.7e-05 0.0013 19.2 3.1 1 23 1033 1055 1033 1055 0.98 32 34 3.3 2.5e+02 2.6 4.3 2 15 1085 1097 1084 1106 0.71 33 34 1.4e-06 0.00011 22.6 1.6 1 23 1112 1134 1112 1134 0.98 34 34 0.07 5.2 7.9 1.1 1 20 1140 1159 1140 1161 0.94
Sequence Information
- Coding Sequence
- ATGTGCTATGATAAATTGCATACCATCTCGCTGAAACctaaaaaaagAATAAAGCTGGAGAATGAAAATCCAACGTCGCCATTCCAGGAAGTGAGGATCAAGTCTGAAAATATACAGACACAATGGATTTGTACGGACTGCTCTGAAGCATTCGAAACGATAGATTTGTTGTCTAGCCATTATAGGCAGAATCACAATTCTGATCTATATCCATGTTATGTATGTGGCAAGATATTCAAGTTCCTTAAGATGGCggaacaacataaatattttatgcacCCAGACGAGTGTAATTATGAATGTTCAGAGTGTCGTGAAGTGTTTAAAACAGAAGAGCTGTTAGCTAGCCATCTGAAGAATGTTCATGTATTCCCATGTAATTTATGTGGCAGGATATTCAAGCGACCACTTAAGCTCACCCAGCACAAAGAAGCAGTTCACTTAAACGAAGGCAACCACGAATGCTCAGAGTGTTCTAAGATCTTCAAAACAAAGGTGCATCTATCTGCTCATAAAAGGATGACGCATCGTGACTGTGTACATCCATGTGAAGTATGCGGAAAGAAATTCAAGCTACCGTATCAAGCCGAAAAACATAAAGAGCTAGTTCACACTGACGAACGTAACTATAAATGTGATATGTGCGATGCTTTATTGAAATCAAGCATGAGTTTAAAAATGCACATTAAACGCATTCATCTAAaagattacaaaatattttgcaagCAGTGTGACCAGGGTTTCATGACAAAGCCAGAGTTGCTTGACCATCAGAGAAGGAAGCATGAGAAGATCTTGTTAAGCTGTAGCGTTTGTGAAAAAACCTTCCTAAACAAGGGTGCGCTGAAAATACACGCAGATGAAAAGCATGGCAATGAACAACACGTTTGCTCACTATGcgagaaaatattcaaatccaGAGTGAGCTTGAAGGCTCACTTGATTCGCAAACACAAAAAAgataagagttttgtttgtgataaATGCGGCAAAGAAGTTCGTTCCAGTGATGCACTGAAGCTACATATGAATATGCATGAAGGTGTGAAACCGTTCAAATGCGATGTCTGTGAAGAGAAATTCACTTCTAAGAGCAACTTGAGAACACATAAGCGAATTCATACTAACGAGAAGCCGTTCGCGTGcaaattttgtggaaagtgtttCAGACAGCGACCACCATTGACTATTCATATGAGAATCCATACTGGCGAAAGACCCTACAAGTGTGAAGTATGCTGCAAAGGTTTTATAAaaggAGTAGTTCGAAAGACCAAGCTAACAGTAATAATCTTAAATAATGAAACTGAAGTTACCAAAGGGCCAAAAACAAGTGAAAAGGGAGATATGAAAACTGAAACAACAACTTTTAAAGAAAAACTGAATGAAGATGAGCATACTGGAATGCAAGAGTCCGAAGAAAGTAATGATAATAACAGAAAGGCTGAAGTACCACAAAAATCAACCAATGACATTGGAGAAGTTGGAGTGCCAGTACCAAGTGACGTAATCACAAGCCACATTGAGGAATCTATGATTCCAAAAGCAACGCTTGGTGGAGATAATCTTCACAATTTCATGAGCCACGTAGCAAATGAGTACAAATGTAATTTCTGTGATCGATCTTTCCGCTTCAATAAAACCCTGTCTCTTCACATAGAAAGCGTCCATGGGAATAGCGGCGTACTTTCCTGTGAACCATGCGACAGGACTTTCACATTTTTGAAGCATCTGAACAACCATCATATCGTCGACCACGATGGTTTTCGATACACCTGCAAAGTCTGCAACAAAGAGCTGAAAAGTAGCGACCAATTCAAGATTCATCAGTCATACCACGAGGAAGTCCGCAAGATATTTCCTTGCGATGAATGTAATTCTGTCCTGTCTTCCAAGAACACTTTCAGAACCCACAAACGTAGGATGCATTCGAACTTGGGCAAGAAAGTTTGTGACGTTTGTGGGAAAGCTTGTTCTGATATGGCGACCCACAGGCGGATCCACACGGGAGAAAGACCGTACAAATGTGATGTGTGCAGTGCCAGTTTCTATCATTTCAGCAACTTCAAAGGCCACCAGCTGATCCACACGAAGGAAAGACCGTACGTTTGCGAAATATGCGGGAAGACTTACAACAGTCGCAGTAATCTGACGAATCACATACACAGTCATCAAGTAGAGAAGAAAATTACCCAGACGAAACCCACGCCTAAAAGGAAAGAAGCGCCGAAAAGCGGCACTGACAGGAACAAGAAGGTTCAATGTGAATATTGCCGAAAAATGTTCAGCAAAAGTTTCATTAGCGTTCATATACGTACACAACACAAAGGCGAAAGACGGTACGCATGTAACATTTGCGATAAGAAATTTACCCAGTCGGGCTATTTGATAATACATAGAAGATTTCATACCGGCGAAAGACCTTATAAATGTGAGGTTTGCGATAAAGGTTTTGTTAATAAAGTGAGATTGAGGTTGCACAAgTCAAACAAATCTGCTACTGATAGTTTGCATTGCAACGTATGCAGTGAGAAGTTCAAAAATGAACATTCGCTTCAGCTTCACAACTTCTCAAGTCATGTAGCTAACATGTTCAAATGCAATCTCTGTGATAGAGCTTTCCGTTTCAATAAAACTTTATCTCTTCATAAAGAAAGTGTCCATGGCAATAGCGACGCACTTTTCTGCCAACCGTGTAACAGGACCTTTACATTTATGAAGCATCTGGATACACACCATACCGTCGACCACGATGGTTTTAGATACACCTGCAGACACTGCCACAAAGAACTGAAAAGCAGGGACCAATTCAAAATTCATCAGTCATACCACGCCGAGATCCGCAAGATATTCCCTTGCGATGAATGTAAAGTGGTTCTGTCTTCCAAGAATACATTCAGGAATCACAAAAGGACACAGCATTCAAAGTTGGGCAAAAAAGTGTGTGACGTTTGCGGAAAAGCTTTCACGAATATTTCGGCTCACAAGCGGATCCACACAGGCGAAAGGCCCTACAAATGTGACGTGTGTACTGCGAGTTTTGCACATTTGAGCAATCTCAAAGATCACAAACTGATACACACGAAGGAAAAACCGTATGTTTGCGAAAAATGTGGGAAGTCTTTCAATAGTCGCAACAATCTAAAATGCCACATAAAAGTTCATTTAGGGTGGAGGAGGAACACCAAGAAGAAAATCGATTCCAAAGGGAAAATTGATGCGAAAAGCGAGACTGACAAGAAGAAAAAAGTCAAATGTGAACATTGCCAAAAATTTTTCAGCAAATGTTTTGTGCCCGTGCATATACGCACACAACACCAAGGCGAAAGACGCTACTCTTGTAAAATTTGCTATAAGACCTTCACCCAGtctgcaaatttgataatacaCACAAGATATCATACGGGCGAAAGGCCTTATAACTGTGCAGTGTGCTATAAAGGTTACGTTACTAAAGCGAAGCTGAGATTGCATAAGTGTTTAGGGCGAAACAACGTTGTAACTGTAAAAACGGAGATTAATTGA
- Protein Sequence
- MCYDKLHTISLKPKKRIKLENENPTSPFQEVRIKSENIQTQWICTDCSEAFETIDLLSSHYRQNHNSDLYPCYVCGKIFKFLKMAEQHKYFMHPDECNYECSECREVFKTEELLASHLKNVHVFPCNLCGRIFKRPLKLTQHKEAVHLNEGNHECSECSKIFKTKVHLSAHKRMTHRDCVHPCEVCGKKFKLPYQAEKHKELVHTDERNYKCDMCDALLKSSMSLKMHIKRIHLKDYKIFCKQCDQGFMTKPELLDHQRRKHEKILLSCSVCEKTFLNKGALKIHADEKHGNEQHVCSLCEKIFKSRVSLKAHLIRKHKKDKSFVCDKCGKEVRSSDALKLHMNMHEGVKPFKCDVCEEKFTSKSNLRTHKRIHTNEKPFACKFCGKCFRQRPPLTIHMRIHTGERPYKCEVCCKGFIKGVVRKTKLTVIILNNETEVTKGPKTSEKGDMKTETTTFKEKLNEDEHTGMQESEESNDNNRKAEVPQKSTNDIGEVGVPVPSDVITSHIEESMIPKATLGGDNLHNFMSHVANEYKCNFCDRSFRFNKTLSLHIESVHGNSGVLSCEPCDRTFTFLKHLNNHHIVDHDGFRYTCKVCNKELKSSDQFKIHQSYHEEVRKIFPCDECNSVLSSKNTFRTHKRRMHSNLGKKVCDVCGKACSDMATHRRIHTGERPYKCDVCSASFYHFSNFKGHQLIHTKERPYVCEICGKTYNSRSNLTNHIHSHQVEKKITQTKPTPKRKEAPKSGTDRNKKVQCEYCRKMFSKSFISVHIRTQHKGERRYACNICDKKFTQSGYLIIHRRFHTGERPYKCEVCDKGFVNKVRLRLHKSNKSATDSLHCNVCSEKFKNEHSLQLHNFSSHVANMFKCNLCDRAFRFNKTLSLHKESVHGNSDALFCQPCNRTFTFMKHLDTHHTVDHDGFRYTCRHCHKELKSRDQFKIHQSYHAEIRKIFPCDECKVVLSSKNTFRNHKRTQHSKLGKKVCDVCGKAFTNISAHKRIHTGERPYKCDVCTASFAHLSNLKDHKLIHTKEKPYVCEKCGKSFNSRNNLKCHIKVHLGWRRNTKKKIDSKGKIDAKSETDKKKKVKCEHCQKFFSKCFVPVHIRTQHQGERRYSCKICYKTFTQSANLIIHTRYHTGERPYNCAVCYKGYVTKAKLRLHKCLGRNNVVTVKTEIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -