Bsil014818.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bruchidius siliquastri
Gene Symbol
-
Assembly
GCA_949316355.1
Location
OX438536.1:4656230-4668860[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 59 8.5 6.3e+02 1.3 0.8 9 23 2 16 1 16 0.93
2 59 2.5 1.9e+02 3.0 3.2 2 23 149 170 148 170 0.92
3 59 0.34 26 5.7 0.5 2 23 176 198 175 198 0.84
4 59 0.0035 0.26 12.0 2.7 2 23 205 227 204 227 0.97
5 59 0.0023 0.18 12.5 2.4 1 23 233 256 233 256 0.97
6 59 0.00014 0.01 16.4 1.6 1 23 261 283 261 283 0.96
7 59 0.00044 0.032 14.8 2.7 1 23 292 314 292 314 0.92
8 59 2.4e-06 0.00018 21.9 0.4 1 23 321 343 321 343 0.98
9 59 3.5e-05 0.0026 18.3 0.1 1 23 349 371 349 371 0.98
10 59 3.5e-05 0.0026 18.3 0.4 1 21 377 397 377 398 0.97
11 59 0.0072 0.54 11.0 4.7 2 23 409 431 408 431 0.96
12 59 0.0055 0.41 11.4 0.6 2 23 437 459 436 459 0.93
13 59 0.0021 0.16 12.7 2.0 1 23 465 488 465 488 0.96
14 59 0.41 31 5.5 6.6 1 22 494 515 494 517 0.88
15 59 0.023 1.7 9.4 2.2 1 23 522 544 522 544 0.91
16 59 0.016 1.2 9.9 0.8 1 23 553 575 553 575 0.97
17 59 1.5e-05 0.0012 19.4 0.1 2 23 583 604 582 604 0.96
18 59 9.6e-05 0.0071 16.9 1.6 1 23 610 632 610 632 0.99
19 59 9.7e-06 0.00073 20.0 0.6 1 23 638 660 638 660 0.98
20 59 0.23 18 6.2 0.2 1 14 666 679 666 680 0.89
21 59 0.00012 0.0087 16.6 1.1 2 23 683 705 682 705 0.97
22 59 0.0033 0.24 12.1 0.2 2 23 711 733 710 733 0.92
23 59 0.084 6.2 7.6 0.4 1 23 739 762 739 762 0.96
24 59 0.0028 0.21 12.3 1.7 3 23 770 790 768 791 0.96
25 59 0.0021 0.16 12.7 0.2 1 23 796 818 796 818 0.98
26 59 0.0023 0.17 12.6 7.6 1 23 826 848 826 848 0.97
27 59 0.0033 0.24 12.1 0.7 1 23 858 880 858 880 0.98
28 59 0.0033 0.25 12.1 2.9 1 23 886 908 886 908 0.98
29 59 5.5e-06 0.00041 20.8 0.2 3 23 916 936 914 936 0.98
30 59 0.0022 0.16 12.6 4.3 1 20 942 961 942 963 0.95
31 59 7.8e-05 0.0059 17.2 0.9 2 23 980 1002 979 1002 0.95
32 59 0.002 0.15 12.8 0.4 2 23 1008 1030 1007 1030 0.92
33 59 5.1e-05 0.0038 17.8 1.5 1 23 1036 1059 1036 1059 0.96
34 59 1.1 85 4.1 3.1 1 23 1065 1087 1065 1088 0.93
35 59 0.00018 0.013 16.0 3.0 1 23 1093 1115 1093 1115 0.99
36 59 0.0012 0.09 13.4 4.5 1 23 1124 1146 1124 1146 0.97
37 59 3.6e-05 0.0027 18.2 0.3 1 23 1154 1176 1154 1176 0.98
38 59 2.3e-05 0.0017 18.9 0.0 2 23 1183 1204 1182 1204 0.98
39 59 5.5e-06 0.00041 20.8 0.2 1 23 1210 1232 1210 1232 0.99
40 59 2.9e-05 0.0022 18.5 1.2 2 23 1253 1275 1252 1275 0.95
41 59 0.00042 0.031 14.9 0.4 2 23 1281 1303 1280 1303 0.96
42 59 0.00067 0.05 14.2 1.0 1 23 1309 1332 1309 1332 0.94
43 59 0.011 0.82 10.4 3.6 1 23 1338 1361 1338 1361 0.93
44 59 0.00012 0.0093 16.5 1.7 1 23 1366 1388 1366 1388 0.99
45 59 0.57 42 5.0 7.8 1 23 1397 1419 1397 1419 0.96
46 59 0.013 0.97 10.2 1.0 1 23 1427 1449 1427 1449 0.94
47 59 2e-05 0.0015 19.0 0.3 1 23 1455 1477 1455 1477 0.99
48 59 1.7e-06 0.00013 22.4 0.4 1 23 1483 1505 1483 1505 0.99
49 59 0.27 20 6.1 6.2 1 20 1511 1530 1511 1532 0.95
50 59 0.00096 0.072 13.7 1.9 1 23 1555 1578 1555 1578 0.96
51 59 2.1 1.6e+02 3.2 0.6 2 23 1584 1606 1583 1606 0.91
52 59 0.015 1.1 10.0 0.1 2 23 1613 1635 1612 1635 0.94
53 59 0.019 1.4 9.7 9.0 1 23 1641 1663 1641 1664 0.96
54 59 2.9e-05 0.0021 18.6 1.0 1 23 1669 1691 1669 1691 0.98
55 59 0.00025 0.019 15.6 4.7 3 23 1702 1722 1702 1722 0.99
56 59 0.00053 0.04 14.6 0.9 1 23 1732 1754 1732 1754 0.98
57 59 9.7e-05 0.0073 16.9 4.4 1 23 1760 1782 1760 1782 0.97
58 59 3.5e-06 0.00026 21.4 1.6 1 23 1788 1810 1788 1810 0.98
59 59 0.043 3.2 8.5 1.6 1 21 1816 1836 1816 1837 0.95

Sequence Information

Coding Sequence
ATGAGGTTCAACACTCCACATAAATTGCAACTTCATCGAGAAATTCATAAAGCTACAGAACTAACCAAAAACAAAGCACAGGTAGATGTTGATGAAgcgataataaaatatattataaaagatGTAGATGGCATTACAGCTGAAGAAGCAACATCAGGAATGCAAGGGACCTTAGAAAATACGGGAATAGGGGAGAGGAAACAAGCAACAGACCTTCGATGTGTTAATAACACGCACATGCAATCAGAAGTAGCGCAAATAAATGATGAGATAGAAGCCACcacaaatgaaattataaaccATACAAAAGCGACATTGGGCAGTCTAGGGATATTTGATGAAGTGGACATAGAAGATCAGATAGACGCGATAACGAATAATGCTATTGCAAAGGCGGAACTGGTTTTACTTGAAGGTCCAAAAACGGTGAAGATCAAAGAGCTATCGTGTCTGCAATGTGGAAAACTTTTCCAGTCTAAGAAAAAGCTCAGATGCCACGGCAGAGCCCATAGGAAAAAGAACATACAATGCGATTTGTGCAATAAAATGTTCTCGTTAAGAAACATCATGTTGAAACACAAGCAGTCCGTGCATCTAGCTAGCTACGATCAAAAATGCGATATGTGTGAAGCTAGCTTCAAAACAGTCCATACATTAAACAATCACAAGCGAATAAGACACATCAAAGATTACTCATTCACTTGCGATAAATGCAACAAAGGCTTCTTCCTCAGAAAAGAACTACGAATCCATCATCAAGTAGCTCATGAAAACGTTTTCTTCAAATGCAAATATTGCGAAAAACCGTACAGATCTCTGCAGAGTTTGAACCGTCACGAGCTCCTACATGATCccaactacaagaggcaagaatTTCTTTGTCCGCATTGCCCCAAAGTGTTTCATGATAGAAGTAGCTTCGCTAGGCATAAAGCTGAACACACATTAGGCAAGCAAAACTTCATCTGTGATATTTGTGGTAAGGTTGTGACTAGTCAGTTCAGCCTCAAGAATCATGTCAGAACACATACAGGCGAGAAAGCTTTTGTATGCAACATCTGCGGGAACGGCTTTGCTACTAAACCTACGCTGGTTACACATATTAGGATACATACAGACGAAAAACCATATATTTGTTCTGTGTGTCAAAAGAAGTTCAGACAGAAGCCAGCTTTAAATATTCACATGAGATTTGTTGCGGGTCGTACATCGTCCGAAGAAAAAAGATGCTTGACGTGTAACAGAACTTTCACCAGCAAACTCCAGATGAAGCGACACATTCATCGAGCGCACAAACGAAAGACGATACCCTGCGACGTGTGTGGCAACCTTTTCGTGCACAAGTCTCAGATGCAGAAACACAGACAGGACGTGCATTTGGCAGAATACAGTCACAAATGCGATCTGTGCGATCTGTCGTTCAAGACGGACAATACTTTGCGGATGCACAAACGGGCTGTTCATATCAAAGATTACAATTTTCATTGCGACAAATGTGGGAAGGGATTTTTCCATATGAAGCAGCTCTCGAACCATTGCCAGGTCGAACACGACAAAGTTCCATTCACCTGCGATGTGTGCGGTAAATCCTACAGATGCGAACAAAGCCTCAAAAATCACCTCCCCACACACGATCCTAACTACAAAAAGAAGGAATACTACTGCGCGGTGTGTTCAAGGGTATTTGCAAGCAGAACAACCTTTGGAATGCACAAACGAGAGCACAAGATAGGCAAACTGACTTGCGTTTGCGAAGTGTGCGGTAAAGTGGTTTCGAACCCGGGCAGTTTGAGGAATCATATGGACATCCACAAAGGCGTGAAGTCCTACAAATGCAACATTTGCCAAGCTGGCTTCTCGAGCGCGAGCTGTCTACTGACCCATAAGAGGATCCATACTGGGGAAAAGCCATACGCGTGTGTCTTTTGCGACAAGCGTTTCAGACAGAAACCTCCGTTGACTATCCATATGAGGACGCATACAGGGGAAAAACCGTACCAATGCGACCTTTGTGACCAAAGATTCCGAGAGTCTAGTGCATGCCTGAAATGTCAGAATTGCAACAAGGTTTTCGACaacgaagaaaaaataaaaaatcacatgcgTCGTGTTCACAGAACCAAAACAGTTCCTTGCGATACTTGCGGGAAAATGTTTAGACTCAAAAGTGAGATGTTGGTACACAATAAGAACGTCCACTTAGGCAACTACGAATACGAATGTGATATGTGCGAGGCGCGATTGAAGACGGAGAGGACGCTGAGGTTGCATAAGGAAAAGGTACATTTGAAGAACTATACCTTCTGGTGCGATAAATGCGGTAAAGGGTTTTTCATGGTGAAAGACCTACAGACGCACACAAGGGTGCATCACGATAAGGAACCTTTCCAATGCGAAGTGTGCGGCAAGCCTTACCTTTCAGAAGGCAATTTCAAATTGCATGTTCTCACACATGACCCTGTTAGGAAGAAAACGTATCATTGTCCTCAATGCAACAAAGTGTTCGACAATAAGTACAAGTTCCATAGACATAAAAAAGAACATTTAGCTGGCGGTCGGCCTAAGGTGGAGTACGTTTGTGAAATTTGCGGGAAATCGATGGCGAGCAAGTGCATCCTGAAGAATCATATGAACATCCACAAGGGAGTGAAGTCTCATAAATGTGATATATGCCAAGAACTTCTTTCTAGCAGGGGTTGTCTGCAAACGCACATGAGGATACACACCAACGAGAAGCCCTATGGGTGCAATGTATGTGGGAAAAGATTCAGGCAGAAGCCGCCTCTGACGATACACATGAGGATTCATACCGGAGAGAAGCCGTATCGATGTTCTATTTGTAATAAGAAGTTTATTAGTAAATCTGTTTTGAACAACCATAAATGTCATGGGCCTGaCTCTGCTGGTAAGAAACGCCTTCACAGTTCATCCCCTTTGCAATGTTCAACCTGTGGCAGAACCTTGAAGAACAAGAGGAGTTTAACCAGTCACATTCGAGACATACATCGAGACAAAGCAGTACCCTGTGACATATGTGGCAAGCGATTCAAGCTTAAAAGAACCATGGAAACGCATAAACAAGGCGTCCACCTAGCCAACTACGACCACGAGTGTGATTTGTGCGGAGCTAGATTTAAAACGAAGGCCACACTGAACAACCACAGGAAAAGTGTTCACATGCGGGACTACAAGTTCCATTGCGATCGGTGCAATAAGGGTTTTCTAGTCAGTACTCAGTTGCGGATACATAATGAAGTGCACCACAATAACAACCCCTACAAGTGTGAGATGTGCCCAAAGACCTACCTGACTGAACATTCCTTGAAGAACCATATGCAGACTCACGACCCCAATCCTGTGAAGAAAGAGTACAACTGCCCGCTTTGTGGGATGAAGTTTTATACAAGTCATACCTTCTACAGGCATAAGAGAGAACATAAAGCGGGGGGAAAGATTTACTTCATTTGTGATATGTGCGGAAAGCCGTTGAGAACAAGAGAAGGATTTAAAATACACATGAATACGCACAAAGGAGTTAAACCTTCCAAGTGTGATATTTGTGGAGTGGTGTTTGCTAATCCTGGTACTTTGACGGTGCACAAGAGAATCCATACAGGCGAAAAACCTTACTCGTGTGATGTTTGTGGTAAGCGGTTCAGACAGGGTCCTCCGCTAAAGATTCATATGAGAACTCACACCGGTGAGAGACCTTATAGTAACGCACGAATACAGGATGGAGGAATTTCAACATACATCAAATGTTCTCAGTGCGAGAAAACTTTCGAAAATAAAAGCAAGCTAGCAAGGCACAAACGAGGAGTACATAGAAGCAAAGTTATCCCATGCGATCTTTGTGACAGAAAATTTTCTGTAAAAAGCAAAATGGAAGCCCACAAGAAAACCGTACACTTGGCAGAATATACCCACAAATGTGATTGGTGTGAGGCtagattcaaaaacaaatacgCGTTGGCTAGACACGAGACCATGGAACATACGAAAAACTTTGATTTTCATTGCTCGCGTTGCAACAAGGGTTTCGTGTCAAAATGTGATTTGAGAATCCATGAAGAAATACAACACAATAACAAAATGTTTACTTGCGAGACATGTTCCAAAACGTACCGCTCTAAGCCAGCTTTCAAAGACCACTTGATGACCCATGATCCTAGTTATAAGAAGAAAGAGTACCATTGCAAAGAGTGTTccataaagttcacccaaaaacaTAAGTACTACCTACACAAAAACGAACACCAAACAGGCAGCAAGCTGCAGTATATATGTGATGTTTGCGGTAAATCACTGGCATCTAAAGAGAGTTTGAGATGTCACAAGGATATGCATGATGGTGTAAAACCGTTCAAATGCGAAGTCTGTGGTGAAGGATTCGCTAACCATGGCACCTTAGCGACCCACAGAAGAATTCATACTGGAGAGAAACCTTATGTGTGCAATATTTGTAGTAAACGGTTCAGACAGCAACCTCCTCTCAAGATACACATGAGGATTCACACTGGCGAGAGGCCGTACCAGTGTCAAATTTGTCGGATGTGTTTTATCAGCAAAACTGtgttgaaaaatcataaatgtCACGGACCATCTAATGGTTCTGGAACCGATACTGATGCTAGTGGAATGGAATACCAAGCCAATGCAACTTTCAAATGTCTGCAATGTACAAAGGTGTTCGAAAGCAAGAAAAAACTGGGAAGACACAAACGCGGAGTgcacagaaacagaacaattccTTGCGACTTTTGCGAAAAGAAATTCATGGTGAAAAACATAATGGAAAAGCACAAAAGGAATGTCCACTTGGCCGAATATGCCCTACCCTGTGATATGTGCGACGCTAGATTTAAAACTGAGCTTACTTTGGCCAACCACAGAATATCAATACACTTGAAGGCCACAGATTACTACTGCGAACAATGCAACAAGTGTTTTCTACACAAAAAGAAACTACAAACTCACATCAACGTCCATCATAAAAACATCCTCTTTAGTTGTGACAAATGTGATAGAAAATACCGCGACGAGTCGTCTTTGAAAAGTCATGTCGCTACTCACGATCCGAACTACAAACGGAAACTACGTGGATGCAACGAATgcaataaaacattcaaaagtcACAACGCTTACAAACTCCACATGAAAACGCATAAAGGAGGCGGTGACTTCAAGAAAACGTACGTTTGTCACTTGTGTGGCAAGACCCTCAGGACAGTTGAAGGCTTCAAAGCACACTTGGATAAGCACAACGGCATAAAAGCTCACAAGTGTGACGTTTGTGGAGAGTCTTTCTGCAATTATAGCACCTTGAGGACTCATAAGTTGATCCATACGGGGGAGAAACCTCATGTGTGCTCGGTTTGTGATAAGAGATTTAGACAGCGACCGCCGTTGAAGATTCACATGAGGACTCATACCGGGGAAAGACCTTACAAGTGCCAGATTTGTAATACAGGTTATATTAGTAGGACTGTGTTGAATAACCATAGATGTCGTGGACCTGTTGGTGATACTGAATAA
Protein Sequence
MRFNTPHKLQLHREIHKATELTKNKAQVDVDEAIIKYIIKDVDGITAEEATSGMQGTLENTGIGERKQATDLRCVNNTHMQSEVAQINDEIEATTNEIINHTKATLGSLGIFDEVDIEDQIDAITNNAIAKAELVLLEGPKTVKIKELSCLQCGKLFQSKKKLRCHGRAHRKKNIQCDLCNKMFSLRNIMLKHKQSVHLASYDQKCDMCEASFKTVHTLNNHKRIRHIKDYSFTCDKCNKGFFLRKELRIHHQVAHENVFFKCKYCEKPYRSLQSLNRHELLHDPNYKRQEFLCPHCPKVFHDRSSFARHKAEHTLGKQNFICDICGKVVTSQFSLKNHVRTHTGEKAFVCNICGNGFATKPTLVTHIRIHTDEKPYICSVCQKKFRQKPALNIHMRFVAGRTSSEEKRCLTCNRTFTSKLQMKRHIHRAHKRKTIPCDVCGNLFVHKSQMQKHRQDVHLAEYSHKCDLCDLSFKTDNTLRMHKRAVHIKDYNFHCDKCGKGFFHMKQLSNHCQVEHDKVPFTCDVCGKSYRCEQSLKNHLPTHDPNYKKKEYYCAVCSRVFASRTTFGMHKREHKIGKLTCVCEVCGKVVSNPGSLRNHMDIHKGVKSYKCNICQAGFSSASCLLTHKRIHTGEKPYACVFCDKRFRQKPPLTIHMRTHTGEKPYQCDLCDQRFRESSACLKCQNCNKVFDNEEKIKNHMRRVHRTKTVPCDTCGKMFRLKSEMLVHNKNVHLGNYEYECDMCEARLKTERTLRLHKEKVHLKNYTFWCDKCGKGFFMVKDLQTHTRVHHDKEPFQCEVCGKPYLSEGNFKLHVLTHDPVRKKTYHCPQCNKVFDNKYKFHRHKKEHLAGGRPKVEYVCEICGKSMASKCILKNHMNIHKGVKSHKCDICQELLSSRGCLQTHMRIHTNEKPYGCNVCGKRFRQKPPLTIHMRIHTGEKPYRCSICNKKFISKSVLNNHKCHGPDSAGKKRLHSSSPLQCSTCGRTLKNKRSLTSHIRDIHRDKAVPCDICGKRFKLKRTMETHKQGVHLANYDHECDLCGARFKTKATLNNHRKSVHMRDYKFHCDRCNKGFLVSTQLRIHNEVHHNNNPYKCEMCPKTYLTEHSLKNHMQTHDPNPVKKEYNCPLCGMKFYTSHTFYRHKREHKAGGKIYFICDMCGKPLRTREGFKIHMNTHKGVKPSKCDICGVVFANPGTLTVHKRIHTGEKPYSCDVCGKRFRQGPPLKIHMRTHTGERPYSNARIQDGGISTYIKCSQCEKTFENKSKLARHKRGVHRSKVIPCDLCDRKFSVKSKMEAHKKTVHLAEYTHKCDWCEARFKNKYALARHETMEHTKNFDFHCSRCNKGFVSKCDLRIHEEIQHNNKMFTCETCSKTYRSKPAFKDHLMTHDPSYKKKEYHCKECSIKFTQKHKYYLHKNEHQTGSKLQYICDVCGKSLASKESLRCHKDMHDGVKPFKCEVCGEGFANHGTLATHRRIHTGEKPYVCNICSKRFRQQPPLKIHMRIHTGERPYQCQICRMCFISKTVLKNHKCHGPSNGSGTDTDASGMEYQANATFKCLQCTKVFESKKKLGRHKRGVHRNRTIPCDFCEKKFMVKNIMEKHKRNVHLAEYALPCDMCDARFKTELTLANHRISIHLKATDYYCEQCNKCFLHKKKLQTHINVHHKNILFSCDKCDRKYRDESSLKSHVATHDPNYKRKLRGCNECNKTFKSHNAYKLHMKTHKGGGDFKKTYVCHLCGKTLRTVEGFKAHLDKHNGIKAHKCDVCGESFCNYSTLRTHKLIHTGEKPHVCSVCDKRFRQRPPLKIHMRTHTGERPYKCQICNTGYISRTVLNNHRCRGPVGDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-