Bsil001351.1
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- -
- Assembly
- GCA_949316355.1
- Location
- OX438529.1:28790335-28791857[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5e-09 5.2e-06 26.2 0.0 17 40 1 24 1 30 0.88 2 2 4.6 2.8e+03 -1.7 0.0 29 38 33 42 33 45 0.83
Sequence Information
- Coding Sequence
- ATGAGCATTCGAGAAGCAAGCCGCGTTTatggcatcccagaagctacTCTACGGCGTCGAAAGAAGAACAGGAATGTCGATAGCGAAAACCTGGGACCTACATCCACACTAGAAGATCATAATGAAGCTAAAATAGTGgcacatattaaaaaattacaaaagcacGGATTTGCTCCTACACGGTCTCACGTGCGTTCTATGGCGTTCGAGTTAGCCGAAAGATTGCAGTTACCGCACAAATTTAACAGAGAAGCACGTATGGCTGGGTATCCATGGTTACATTCCTTTTTGAGAAGGCACCGACATCTTAGCATACGAAAATCTGGAGGAGTTTCTGCTGCCAGAGCTTTAGCAATGACACGGGAAAATGTGGCCTCATATTTTTCACTCCTCGAAAGAACGCTGATTGAAAACGAATTGATGAACGAACCTGGACGAATCTACAACATTGATAAGACTGGGTTACAACTCAACAACCGTCCCGAACACGTTTTAGCTAGCAAGGGGTCGTGTCTGTTACATCTAGGGAAGAACAAGAAGCCCGAATACAAAGATGGGATGCCGCCTGGGTCCCTCGTCATTATGTCGCAGAAATCGGCATACGTTAAcagcgatattttttttaatcggcTGCAAGAACAATTTATTCCGCGCAAACCGGCAGGAAAGGTGCTACTTTTGTTAGATGGGCACTCCTCACATTGTAGCAACGTCGAAATGCTCGAATATGCAGCTGAGAATGAAGTCATTCTGCTTTGTTTGCCAAGTCATAGCACCCAGTTTTTGCAGCCCTTGGATAGAGGCTTTTTCAAAGCCTTCAAAGCATTCTATTACGATGCTGccaatttatttttacgaaCAAATCCCGGAAGACGACTGAACAGGCTCCAGTTCGGACAGTTACTTGCCACTGCTTGGGAAAAATATGCAACGATAAAAAATGCAGTGTCCTCGTTTAAAGCAACAGGCATTGTCCCTTTCGATCCATCGATCATTCCTGATTATGCTTACTTGACAGAGCAAGAAGCACAAACTAAAGCAAGTAATCCTGAAGAAGATATTCAAACACATACAAACGCCCCAGTTGCCGTTGTTGGGGATACGTCAAATTCTCGAAAACCTGGTTGTTCACATTGGCCTGAAACAGACCCCTCACCAAATGAAGACGCACTCGACATCAGCACACGGCACAGGTCAATTTCACCTTTGCCTATTAGTTTCAATTCGCCTGGAAAGGACCCTACTCCTGGTAAAATGCTGGACCAAATATCTCCTGTGCCCATTGCTAAGGCAGTCGAAACTGTACGGAAACGAAGCAGACAACTTGCTTCTGTTTTAACAGACAATGACAACATCTCAGAAAAGAGACAAAAATTGGCGGTAAAAGAAAAAAAGCCGGAAAACCAAAACGCAATGAAGCAAAAGGCACAACAAAAACTGTAA
- Protein Sequence
- MSIREASRVYGIPEATLRRRKKNRNVDSENLGPTSTLEDHNEAKIVAHIKKLQKHGFAPTRSHVRSMAFELAERLQLPHKFNREARMAGYPWLHSFLRRHRHLSIRKSGGVSAARALAMTRENVASYFSLLERTLIENELMNEPGRIYNIDKTGLQLNNRPEHVLASKGSCLLHLGKNKKPEYKDGMPPGSLVIMSQKSAYVNSDIFFNRLQEQFIPRKPAGKVLLLLDGHSSHCSNVEMLEYAAENEVILLCLPSHSTQFLQPLDRGFFKAFKAFYYDAANLFLRTNPGRRLNRLQFGQLLATAWEKYATIKNAVSSFKATGIVPFDPSIIPDYAYLTEQEAQTKASNPEEDIQTHTNAPVAVVGDTSNSRKPGCSHWPETDPSPNEDALDISTRHRSISPLPISFNSPGKDPTPGKMLDQISPVPIAKAVETVRKRSRQLASVLTDNDNISEKRQKLAVKEKKPENQNAMKQKAQQKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -