Bsil011890.1
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- -
- Assembly
- GCA_949316355.1
- Location
- OX438534.1:22979753-22981599[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-10 1.9e-07 30.9 0.0 2 38 18 54 17 56 0.95 2 2 2.6 1.6e+03 -0.9 0.0 7 22 138 154 137 154 0.88
Sequence Information
- Coding Sequence
- ATGGGGAACGaaagaaaatattgcaaaaagaaTCTAAGGAAGCTGTGGAAGAAGGATAATATGGTATTGGCATTACAAAAGGTTCTGGAAAAAACGATGGGGCTGAAAAAAGCAGCTAAGCAATTTTGTGTTCCTAGGACGACTCTCCAAAGACTATTGCGTCAATGCCAAAATGGTGTTGAACCCAGTGAGGTTGTTAATTTGAAATTAGGAAGGAAGCCAGTTCTAGGGCAAAAGATTGAATCTGAGTtagtaaaatacattttggaaatgGAGAGGATCTATTATGGATTGACCAAGAAGGACATATACAGGATGGCGTACACTTTAGCAGATAGGAATGGAATTTCTCATCCTTCCAATAATGATACCGCAGGACGAAGTTGGATTGATTCGTTTTTGAAGCGTCATGAGGCAGTTTTGTCAGTTCGGAGACCGACTGGAACGTCATTCGCTAGAGCCCTTGGCTTTAATAAGGAAAACGTGCAAGAATTTTTCACCAATTTGGAACTTGAATATTCAAAGCAGAATTTTGGACCGCACCAAATATTCAACGTAGACGAGACTGGTCTGACAGTGGTTCAAAGCAACATTTCAAGGATTGTCGGGCGCAAGGGCAAGAGGCAAATAGCTGCTATGAGTGCTGGGGTTCTCCTTATATTGGATGGACATTATAGCCACACGCGCAACATAGACTTGATCAACATACCGAGGCAAAACCATGTTGTCAACATTTCTCTGCCGCCCCACTCTACTCACAAGCTCCAGCCTTTGGACAAAACCTTCATGGGGGCTTTTAAAACATATTATAGTAAAGAAGTACGGCTGTGGTTGAGAGCAAATCAACGACCCTTAAGTCAGTTTGATTTGGCAGAGCTGCTTGGTAAAGCATATGTTAAGTGTGAAACAGCTGAAATTGCAATGAACGGATTCAAGATTACTGGGATCTGGCCTTTTAAGCCCAGAGAATTTCCAACAAGATCGAACTTAGATATTTTTGATGCTAAGCCAGTATGCTCCAAAGATGTGGAACTACTACAGGAATGTTTTTCCTTTAATCGTTCAAGCGATCCTGCTGTAGAAACTACATTTATTTCTCCATTTGACATATCTCCACTACCAGTTATTAAAAAGAGGATCACCACACGAGGTCGAAAATCTGGTAAATCCAGAATCATAACTTCGTCGCCTTACAAAGACGAGTTGGAGAAATCTCCGGAAAAACAGTCAACGCCTGTAGAAAAGGGAAAACGAAAGATCTTTTCTACTCAAAAGTCGTCCAGCAAAAAGTCACGGAAAGAAGAAAACAAGAAACCTGAAAGCGATTCAGAAGTAGATGAAGTTTTCGTAGCAGCTGATGATGACaatgatttagaaaaaataggtCAAATTCCAGTAGACAACAATGCAGAGTGCTTGTTCTGTCATGGTCGGTTTTCAGATGATACAAGAGGGGAACTGTGGCTCCAGTGCTTGATGTGTCAGCTTTGGGCTCATAAGGCATGTTCTGACGCAGAAAAAGATGCTTATGTTTGCGACTATTGTAAATAG
- Protein Sequence
- MGNERKYCKKNLRKLWKKDNMVLALQKVLEKTMGLKKAAKQFCVPRTTLQRLLRQCQNGVEPSEVVNLKLGRKPVLGQKIESELVKYILEMERIYYGLTKKDIYRMAYTLADRNGISHPSNNDTAGRSWIDSFLKRHEAVLSVRRPTGTSFARALGFNKENVQEFFTNLELEYSKQNFGPHQIFNVDETGLTVVQSNISRIVGRKGKRQIAAMSAGVLLILDGHYSHTRNIDLINIPRQNHVVNISLPPHSTHKLQPLDKTFMGAFKTYYSKEVRLWLRANQRPLSQFDLAELLGKAYVKCETAEIAMNGFKITGIWPFKPREFPTRSNLDIFDAKPVCSKDVELLQECFSFNRSSDPAVETTFISPFDISPLPVIKKRITTRGRKSGKSRIITSSPYKDELEKSPEKQSTPVEKGKRKIFSTQKSSSKKSRKEENKKPESDSEVDEVFVAADDDNDLEKIGQIPVDNNAECLFCHGRFSDDTRGELWLQCLMCQLWAHKACSDAEKDAYVCDYCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -