Bsil003459.1
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- ttk
- Assembly
- GCA_949316355.1
- Location
- OX438530.1:20299958-20305210[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9 3.6e+03 -2.1 0.0 27 34 278 285 278 287 0.84 2 2 4.7e-15 2.9e-12 46.3 0.0 4 42 376 415 373 418 0.94
Sequence Information
- Coding Sequence
- ATGACCGTGCAACAATACTGTTTGAGATGGAACAACCACCAAccgaattttatatcagtgtttTCTAGTCTCCTGAACAGCCAGTCATTGGTTGATGTTACTTTGGCTGCTGAAGGTACACACCTCCAAGCACACAAAGTGGTTCTGTCTGCCTGCAGTTCGTATTTTCAGTCTCTCTTCACTGTAAACCCCTGCAAACACCCAATAGTCATCTTGAAAGATGTGAAGTTTGCTGATTTGAAGGTTATGGTGGATTTTATGTACCATGGGGAAGTGAACGTGTCACAAGAGCAACTACCGTGCATTTTAAAAACTGCAGAGATGCTAAAAATAAAAGGTCTCACAGAAATTCCTGTCGACCAGTCAACAACTACAAGATGTCAAAGCAAACTTCCTGATAAGCCAGAAATACCATCACAAGATGAAGGCATTTGGAGCTTAGAAGAAAATTGTAACAGACCTCCAAGCCCAGCTTCACCCAACAGTAAAAGAAAACGGCTGAAAAAGAACGTGATATGTTCCACAAGCACTTCGACAGACCCAACGACAGAACCTGGCCCCAGCGATATTATATTAAGTACAATGGACAACGTGTTTGGTACGGTAGCGAAAGTGGAGACAGACAGATATACAACGGACAGCACAAGTACCCCAACTCCGCCGCAACCACAGCAACACCAGCCGCAAAAGTGCAATGGAGTCCCTATTCCTAGTATACAGGCAGGACCTTCACATGACATTCAAGAACACGTTGAACAGACGCACCATATATCACTGcAACTTACATCACATGACGTTAACACTTCACATAGTGTTGAATGTCCTCCCATGGAAATACCAAGAACAACGATATCTCAACAAACACCAACAGGCATCCAATGGAACGTATTGGAGCACTCTGGATACGCGAACTACTCACCCGCCACAACCACAATCGTCTCTAACACTTCGGGCACCCAGTTCACCACCACACATAACACTAACGACACCACGTCCATGAAACAATCCCAAACCCCCGACAATGGCGGGGTACTTGCTCAGGACCCTCAGCCTCAAGTGCCAGGTGGAGAGCCTTTGTACCACGTCCACAAGCGGAAACGCAGCATCAACCCCCAAGGGGACCAGAACTTCATGAGAGCCTTAGAGGCGGTCAGGTTTGGCGGCATCGGGTTCTGCAAAGCTGCGAGGATGTACGGGGTCAACAACAGGACGCTTTGGTTGGAGTACAAGAAGCGGGGGTACCCGAACTTCAGGCTGAGCATCAAGAATCGACACAGGTTGCAGATGCAGAAACAAGAAGAAGAAGCTGCAAACCAAGAACATATCGAACAGAATGTGAAAGCGGAAGAACCTAAAGCGTTGGCTTGCACTATAAGTCATCCTATAGCTTTGATTACGGGGAGTGTGTTTGATGGGAAACACATGGAATTGAAACATGTACTTCCTAGGGATAAGTTTTTTGACGTCCCCGAAAATCATGGGGAGACTATAAATTTTTCTAGTTTGAATCTAGAACATATTTAA
- Protein Sequence
- MTVQQYCLRWNNHQPNFISVFSSLLNSQSLVDVTLAAEGTHLQAHKVVLSACSSYFQSLFTVNPCKHPIVILKDVKFADLKVMVDFMYHGEVNVSQEQLPCILKTAEMLKIKGLTEIPVDQSTTTRCQSKLPDKPEIPSQDEGIWSLEENCNRPPSPASPNSKRKRLKKNVICSTSTSTDPTTEPGPSDIILSTMDNVFGTVAKVETDRYTTDSTSTPTPPQPQQHQPQKCNGVPIPSIQAGPSHDIQEHVEQTHHISLQLTSHDVNTSHSVECPPMEIPRTTISQQTPTGIQWNVLEHSGYANYSPATTTIVSNTSGTQFTTTHNTNDTTSMKQSQTPDNGGVLAQDPQPQVPGGEPLYHVHKRKRSINPQGDQNFMRALEAVRFGGIGFCKAARMYGVNNRTLWLEYKKRGYPNFRLSIKNRHRLQMQKQEEEAANQEHIEQNVKAEEPKALACTISHPIALITGSVFDGKHMELKHVLPRDKFFDVPENHGETINFSSLNLEHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00249078;
- 90% Identity
- iTF_00249078;
- 80% Identity
- iTF_00249078;