Bhec022011.1
Basic Information
- Insect
- Brenthis hecate
- Gene Symbol
- -
- Assembly
- GCA_951806755.1
- Location
- OX638282.1:672102-675320[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.036 2.9 9.0 0.8 2 23 70 91 69 91 0.93 2 12 0.0001 0.0082 17.0 1.0 1 23 97 120 97 120 0.96 3 12 0.00086 0.069 14.1 2.1 2 23 139 160 138 160 0.97 4 12 0.0037 0.3 12.1 5.2 1 23 166 188 166 188 0.98 5 12 0.0063 0.51 11.4 1.4 1 23 194 217 194 217 0.97 6 12 5.4 4.3e+02 2.2 0.5 2 21 226 245 225 246 0.88 7 12 0.19 15 6.7 6.3 1 23 338 360 338 361 0.95 8 12 0.067 5.4 8.1 0.6 1 20 369 388 369 390 0.91 9 12 1 80 4.5 3.0 2 23 398 419 397 419 0.95 10 12 0.00038 0.03 15.2 6.7 1 23 422 445 422 445 0.97 11 12 0.5 40 5.4 1.4 2 23 451 472 450 472 0.86 12 12 0.17 14 6.9 3.2 1 23 478 501 478 501 0.96
Sequence Information
- Coding Sequence
- ATGGCAGATGAATGGAGTGCGAAAAGTGATGGAAACCAATCTGAAGATAATATAATACAGTCCGAAGAGCAGGAGACGGACATGATGAGTATGTTTGCTAGTGTGTGGGTCAAAGTTGAAGTGGACGGTTCTGAAGAAGAAGAACATCTAGTAGAAAGGAGATCGAAGAGAAGAAAGAATCAAAAGCGTAAAGCATCTAAATTATTAAACTGCGACCTATGTGATTATACGACTTCGTACAAAAACTGTCTCGAGCTGCACGTAGCAGGACATAAAACAACAAAACCGTTCTCTTGCACTCTATGCGATTATACAACTAAGTATCCAACGTCTTTACAACGACATGTGATGATAAAACATCAGTCAAAAGAAACTGTGTTGACCGAAGAAGAGAAGAACTCAATGACGTTGTTAAAATGTGATAAGTGCGAATACACGACGTATTTCAAATGGAATTTGAACGCCCATAAGAGAAAGCATAACTTGGAAAAGCAGTTTAAATGCCCACACTGCAATTATGCAACCGCATACAGACATAACTACTTGAAACACAGTAAAGTTCACAACGAAGGTGTTTTTTACAAATGCGATAAATGCCCGTTTGTGACTAAATTCGAAGGGCATATAACACGCCATTTGGCTAAAATACACAATGAAGTGACAGAGAAAGCGAATAAATGTGATTTTTGTGATTTCTCAACAATGGTTCGGTGGAGATTGAATATTCATAAGCAGAGAAGCCGTCAAGACAACCCCATTCAGTGCGAACACTGTGACTTCCAAACAGTTTATATGTGTGAGAGTAAGAAACATAAAGTGacacattacaataaaatatacggATCAGGCATTCACAGCAGAATTGAGAATATAGAGGAAAAATCTGATTACATAAGCCGAGAGTGTATTGAAAGAAAGGAGACTCAGACTCAAAACCAGTATACTCTAGACCCAAATTGCCTAGACTGGAATAGTATTCAAGTACTAGAATCAGATGACAAGGATAAACCCTTCATGTGCCACATGTGCAGTTATACATCAAAATTTAAAGCGGCAGTTCAAAGACACTTTCAAAGACATCACACCGGCAGCCAAAACAGACCGTATAAATGCGTTAACTGCGATTTCTCAACTAAAACGAAAGATCAAATCGCTCTACACAATAAAAGAAGTCAGGCAGATAAGGTTTTATACTGTGGAATATGCAGTTTCACAACTAACTTTAAATGTCAATTTGTTATGCATCAAAAGGGTCACTATGCATATAAGTGTACGGTCTGTCCGTACTCCTGTAGGCATAAATATGAACTACAAAAGCATTTTACAACCTTACATCTCGGTAATGGTTTAAAATGTAGCTACTGTGATTATAAAGCAGCGAGAAAAGAAAGTCTTCTCTGCCATGAGACCATTCACACGGGCAATAAGCCGTTCAAATGTATTCACTGTACTTATATGTCTGTCCGTAAGTCGTTATTAGATAATCATGTTAAAAGATACCACAGCGACATAAAGAAAGATATAACTATAGTTAGCGAGGAAAAGATTCAATCTTTAAAAGTGCCAATGCCAGCGTTAATTCAAAGTTTAAAAGAGCAATGCAGTAAAATTCCCATAGATTAA
- Protein Sequence
- MADEWSAKSDGNQSEDNIIQSEEQETDMMSMFASVWVKVEVDGSEEEEHLVERRSKRRKNQKRKASKLLNCDLCDYTTSYKNCLELHVAGHKTTKPFSCTLCDYTTKYPTSLQRHVMIKHQSKETVLTEEEKNSMTLLKCDKCEYTTYFKWNLNAHKRKHNLEKQFKCPHCNYATAYRHNYLKHSKVHNEGVFYKCDKCPFVTKFEGHITRHLAKIHNEVTEKANKCDFCDFSTMVRWRLNIHKQRSRQDNPIQCEHCDFQTVYMCESKKHKVTHYNKIYGSGIHSRIENIEEKSDYISRECIERKETQTQNQYTLDPNCLDWNSIQVLESDDKDKPFMCHMCSYTSKFKAAVQRHFQRHHTGSQNRPYKCVNCDFSTKTKDQIALHNKRSQADKVLYCGICSFTTNFKCQFVMHQKGHYAYKCTVCPYSCRHKYELQKHFTTLHLGNGLKCSYCDYKAARKESLLCHETIHTGNKPFKCIHCTYMSVRKSLLDNHVKRYHSDIKKDITIVSEEKIQSLKVPMPALIQSLKEQCSKIPID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00457609;
- 90% Identity
- iTF_00213008;
- 80% Identity
- -