Bhec012305.1
Basic Information
- Insect
- Brenthis hecate
- Gene Symbol
- -
- Assembly
- GCA_951806755.1
- Location
- OX638260.1:6404950-6413884[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.1e-05 0.0033 18.3 1.1 1 23 263 285 263 285 0.99 2 12 0.043 3.4 8.8 2.0 1 23 293 316 293 316 0.94 3 12 0.00058 0.047 14.6 3.3 1 23 415 437 415 437 0.99 4 12 0.67 54 5.0 1.2 2 23 446 468 445 468 0.95 5 12 0.42 34 5.6 3.2 1 23 472 494 472 494 0.97 6 12 4.8e-05 0.0039 18.0 2.5 1 23 499 522 499 522 0.98 7 12 0.37 29 5.8 2.2 1 22 526 547 526 549 0.80 8 12 0.31 25 6.0 0.0 2 20 568 586 567 588 0.92 9 12 0.86 69 4.7 0.3 2 23 631 653 630 653 0.90 10 12 1.1e-06 8.4e-05 23.3 1.4 1 23 662 684 662 684 0.98 11 12 0.00035 0.028 15.3 0.7 1 23 690 712 690 712 0.96 12 12 1.8e-05 0.0014 19.4 4.6 1 23 718 741 718 741 0.98
Sequence Information
- Coding Sequence
- ATGCTCGAATTGAAAGTATGCATGGTATGCTTAAAAAGTGATGTGAAAGTTTTTAGTATGAATACAGGTCAACTAAGAAAGGAATATAATTTAGCATCAGGTTTAAAGACCAATAATCATAACGGATTACCTGAGTATTTGTGTTATCAATGTGTAGCTTATGTAAGAAATTTTAAGAAGTTTAGAGATAAATGCCAACGTACATATTATGCTTTGCAAGAAGTACTACATAgaaataaagagatTACCAAAACTATTATCGAGGAaatagatacaaaaatattaaaaatagagcCAACTTTGTCATATTTGACTCCAAATCATTCAAGGACTAAGTATGAAAGAGCAAAATTTAAATGGATAAAACATAACCGAGTAGGATTAAAACATCAAGATGAAATCTCAGTATTCCAATACACTACAACATCTGATGATCTCATATTTGAAGTTCCTAGAAAGAAACCCAAACTTTTGAAGGACTTAGTTGAAGAATGTATAAAACAAGAAGATAAAACTATTGCATCTTTGAAACCGTCACTTGAAAATGAAAAAGCTGTTGAAATAGAAGTTAATGATAGtatctttgataataattttgataattgtGATGAAGAAATTATTGATATtgataatattgacattaatgtTACTAATGAAGTACAATCAAAAGGAGATGAAGATGTAGATGGAATGAATTTAGAAGAAGAATATGCCACAATGTTTCCCATATCAATAGTAGAAGCAGAGGCCGTTGCAGATGTGTATAAATTGTTTGCACAGGGCAAATTTCAATGCACTGTGTGTAAGAAGgcttattataatgaaaaccgTCTTAGTGCTCACATGAGAATGCACGAtacacaTACAAGTGGGTCATACTTCTGTGGTCTCTGTTCTTATTACTACAGAACAGAATTTCTGTTAAGAACCCACATGACTGAAAaacatatgtacaaatatttatgtaaaaagtgTCCTGAAGTAAATTTTGATAGAACATCagcaaaacaacattttatatgGGCTCATCTACAGAAGGGTTCGAAAAAAGATGCAAACTGGTATGAATCTCAACCTTCAACAGCTACTAAAGGcaataagaaaaataagttatttatacgACCTATAAGAAATAGCCAGAGATTACCTCAAGATTTCCCTGTATACTCACCAATTAGCCAAGAAGAACAATATGCAATAGTCAAGGAAAGGCagaaaactaaaaactacaTAGACTCGCCATTTAAATGTGAATACTGTTATAAGGGCTTTAGAGAAGTGATcacttataaaaaacatatgaaGAAGCATGATCCtgCACATTCAGGTAAACTACAATGCGATGCTTGCAAAATATACTGTCCAGATGCAAGAAAAATGTACAAACATATGAACATGAgtcatttattcaaatattcatgTCAAATGTGCAGCTATGTTTGTTTCAGCAGaggTCAAGCGAAAATGCACTATAAATGGCATAAAAATGTTACATACTCATGTCCACACTGCAATAAAGAATTTACCAAAGCGTCAACAAGACTAACCCACATACGTATCAAGCACCCGTCCACCTACATCTGCAACCTCTGCGGGCACAGCTTCGTAAGCGTCACGGGCCTTTACTGCCATAAAAAGCTTGCTCATACAAAGCagGAGGTAGAGGAGAGTGCGGGCGCGCCGGATCCCGCGCACGCGCTGTACTGCGCCGAGTGCGACGTGCAGTTCCGCGACGACGCGGCTCTCGCTACGCACTACGGCTCCTCTATCAAGCATGCTGATACTAACTTatctattaaaacattaaagaaAGATGGCGCGGGCATCCGTCGCGGGAGGCCGCGGCAAACGGGCAGCGGCATCGTCAATACAGGAGTGCAAACTTCCACTACTTGTGAGATTTGTCACGAGTACCTGTCCAACGACGCTCAAGCACGCCGCCATTACGAGGCGGAGCATCCCGGCGCGCGCTATCTCAAGAGATATATGTGCGATATCTGTGGGCACACCACTAGGCAATACGCCAACCTGACGGTGCACATGCGCACGCACACGCTGGAGAAGCCGTACGCGTGCCCGCACTGCGAGCGCCGCTTCAGCATGCCCAGCAACCGCGACCGGCATCTTGTGGTCCACACGGGTGAGAAGCGCTACCAGTGCCAACACTGCCACCGGCGCTTCACACAGAGCAGTGCGGTCAAACTGCATATACAGACTGTACACCTCAAGATCCCCTACGCGCCCTGGGATAAGAAGAACCGCAAGCGTCGTAGAGACCCCGATCCTTCCAACCCCCACATGCAAGTCAACCCCAATCCCAACCAACTAGCACTTCCCACGGGACTCGCACCGACCTCCCATCCCGCACAGAAATTCCTTCTAGACTCGTCCCACGGGAACTACCTCAGCGCTTACATCACATACAATGAGTAG
- Protein Sequence
- MLELKVCMVCLKSDVKVFSMNTGQLRKEYNLASGLKTNNHNGLPEYLCYQCVAYVRNFKKFRDKCQRTYYALQEVLHRNKEITKTIIEEIDTKILKIEPTLSYLTPNHSRTKYERAKFKWIKHNRVGLKHQDEISVFQYTTTSDDLIFEVPRKKPKLLKDLVEECIKQEDKTIASLKPSLENEKAVEIEVNDSIFDNNFDNCDEEIIDIDNIDINVTNEVQSKGDEDVDGMNLEEEYATMFPISIVEAEAVADVYKLFAQGKFQCTVCKKAYYNENRLSAHMRMHDTHTSGSYFCGLCSYYYRTEFLLRTHMTEKHMYKYLCKKCPEVNFDRTSAKQHFIWAHLQKGSKKDANWYESQPSTATKGNKKNKLFIRPIRNSQRLPQDFPVYSPISQEEQYAIVKERQKTKNYIDSPFKCEYCYKGFREVITYKKHMKKHDPAHSGKLQCDACKIYCPDARKMYKHMNMSHLFKYSCQMCSYVCFSRGQAKMHYKWHKNVTYSCPHCNKEFTKASTRLTHIRIKHPSTYICNLCGHSFVSVTGLYCHKKLAHTKQEVEESAGAPDPAHALYCAECDVQFRDDAALATHYGSSIKHADTNLSIKTLKKDGAGIRRGRPRQTGSGIVNTGVQTSTTCEICHEYLSNDAQARRHYEAEHPGARYLKRYMCDICGHTTRQYANLTVHMRTHTLEKPYACPHCERRFSMPSNRDRHLVVHTGEKRYQCQHCHRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRRDPDPSNPHMQVNPNPNQLALPTGLAPTSHPAQKFLLDSSHGNYLSAYITYNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00160143;
- 90% Identity
- iTF_00247501;
- 80% Identity
- -