Bhec002959.1
Basic Information
- Insect
- Brenthis hecate
- Gene Symbol
- Zfa
- Assembly
- GCA_951806755.1
- Location
- OX638250.1:17552636-17563419[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.5e-05 0.002 18.9 0.7 1 23 232 254 232 254 0.99 2 10 0.0055 0.44 11.6 0.8 1 23 261 283 261 283 0.98 3 10 3.4e-07 2.8e-05 24.8 2.9 1 23 317 340 317 340 0.93 4 10 0.00085 0.069 14.1 1.1 2 23 347 369 347 369 0.96 5 10 3.7e-05 0.003 18.4 0.4 1 23 383 405 383 405 0.97 6 10 1.5e-05 0.0012 19.6 0.5 1 22 411 432 411 436 0.94 7 10 0.00056 0.045 14.7 2.3 2 23 445 467 444 467 0.96 8 10 4.6e-05 0.0037 18.1 0.2 1 23 473 496 473 496 0.95 9 10 1.2e-06 9.9e-05 23.1 0.2 1 23 505 527 505 527 0.98 10 10 0.011 0.92 10.6 0.0 1 23 533 556 533 556 0.97
Sequence Information
- Coding Sequence
- ATGGAGGATACTATAAAGAACAAATTAGAGCATTGTTTAGGATGCCTAAATCTTAGTGacgaaattaatttacaatgttATAAGCTGCAAATTGAAAACTTGAAAACTTTATTTCAGgttgacTGTCTAAAATTATgctatatttgtaaaaaacttATGCGAAAGGCTGAATATTTCATTAAGAATGTTGAGAGTAATCAGATATTTATGCAGAACTTCTCAAATattacAGATACAACAAATAAAACAGTGAAAAGCAAATATCAAACAACACGAACAGAACAATTAACATTAGATAAAAGTGAATTTAGTGATGAAAATGATATAGAAGAGCCTATTTGTACAGTTTACAGCCGAGGTtgggataataaaataaaaattgaatttaaagaaGAAAGTGTAAATGATTTGGAAGGAGATTTTACGAATTATTTAGataTTCAAGACCAATCTATCAAAGGAGAATCTGATTCTAATGACAATTCAATAAAAGAAGAAAGTACAGAGCTAgatgatataaatttaaacgAGTTGCGAAAAACATTGAAAAGTCATAAAGTTAAGAAAAAAGGACATAAAAGAGACAGTAAAAGCAACATAGaTCTAGTTGTAATCGCATTAAATATAACAAGGGAACAATGTATGGTAGAGCGTTCTAAAATGTTGAAAGATCCAAAGTATATGAATTTGGCATACAAATGTGAAGATTGCGTGaagggttttaattttaaaggagCGTATGAGAAGCATATGGAAAAACATAGTAAGGAGATGGGTGAATACGAATGTGACATTTGCAAACAGAGAATGGCGACCATGGACAAGCTAATGAGTCATCAACGATATCATAGAATacgATACAAATGTATAGAATGCGATCTAATAAGAATAAGTAGGTTGACCATAAAGGATCACTACACGGCGCATCATTTGCAGGACACTTTCCAGTATAAATGCTCACATTGTAATAAAACGTTTAaACGGCAAGTGTCACTGAGAAAGCATATAGCCGACGTACATAGAAGTAAGAAACGGCCTCAGTGTAACTACTGCCAAAGAACCTACGCCAATAAAGAGATTTTGAAGACTCATATGATAAGTAAACATTCATCAGAAGTAACGTCAGGGGAAGTCCCGAGCAAAAAGCATGTTTGTTCGGAATGCGGTGACGCTTTCAAAGCCCCCTCACAGTTGAAGAACCACATGATAAAACACTCTgtgaatagaaattattattgtgtGGAATGTAATAGaaGCTTCAAATCGAATAATACATTAAAGcaacatttaaaaatagctGCCCCACATGTCAATTATATGGATTTACCCTTGCAATGTAATCACTGCGAAAAAAGATTTAGTATTAGACGAGACGTCGACCGACACATGAATAGAGTGCATCTAAATATCAAACCATATCAGTGCGATAAATGTGataagGCTTATGTGAACGCGTGGTCTCTTACGGAACACTCGAGGTTTGCGCACGAGGGGTATAAACGTCCTTTGAATTTTCCATGTCCGCTCTGTGATAAAGTTTTTGATCGCAACGCAACCCGCAAAGCGCATATCCGGACGCACACCGGCGAACGGCCGTTCCAGTGCCCGCGCTGCGCCGCGCGCTTCGCGCAGGCCGGCGTGCTCGCCACGCACGTGCGCCTCGTGCACCTGCGCCTGGCGCGCGACggccgcccgcgccgcgccgccgccgccgacaCCGCGCCTTAG
- Protein Sequence
- MEDTIKNKLEHCLGCLNLSDEINLQCYKLQIENLKTLFQVDCLKLCYICKKLMRKAEYFIKNVESNQIFMQNFSNITDTTNKTVKSKYQTTRTEQLTLDKSEFSDENDIEEPICTVYSRGWDNKIKIEFKEESVNDLEGDFTNYLDIQDQSIKGESDSNDNSIKEESTELDDINLNELRKTLKSHKVKKKGHKRDSKSNIDLVVIALNITREQCMVERSKMLKDPKYMNLAYKCEDCVKGFNFKGAYEKHMEKHSKEMGEYECDICKQRMATMDKLMSHQRYHRIRYKCIECDLIRISRLTIKDHYTAHHLQDTFQYKCSHCNKTFKRQVSLRKHIADVHRSKKRPQCNYCQRTYANKEILKTHMISKHSSEVTSGEVPSKKHVCSECGDAFKAPSQLKNHMIKHSVNRNYYCVECNRSFKSNNTLKQHLKIAAPHVNYMDLPLQCNHCEKRFSIRRDVDRHMNRVHLNIKPYQCDKCDKAYVNAWSLTEHSRFAHEGYKRPLNFPCPLCDKVFDRNATRKAHIRTHTGERPFQCPRCAARFAQAGVLATHVRLVHLRLARDGRPRRAAAADTAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00212802;
- 90% Identity
- -
- 80% Identity
- -