Basic Information

Insect: Brenthis hecate
Gene Symbol: SmE
Assembly: GCA_951806755.1
Location: OX638250.1:19635116-19655093[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.7e-11 6.9e-09 35.7 0.1 1 38 14 52 14 56 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.7e-11	6.9e-09	35.7	0.1	1	38	14	52	14	56	0.92

Sequence Information

Coding Sequence: ATGCctcgtacatatattaaaaaaaaaattgcgccGTACACGCAGGAGGACATGGCCAAAGCGATTCAAGCAGTAGTTAAAGGCGAGATGAGTATGTATGCTGCTGCCAAAATATTTAGAATCCCAACAACAACTCTATTtggtagaataaaaaaaaattctagagCTCCAAAAGTTGGCAGACCATTAGCTATACCAATATCATGCGAACAACGATTGGCGGATGCTATAGCAACTATGGAAAAGTGGGGGTTTGGTCTAACGAGACAGGAGGTATTAGCAATTGTTGCTGATtatgttaagaaaaataatttaagcactCCCTTTAACGATAGTAAGCCGGGGCCTGATTGgttcataaattttaagaaaaggcATGGACTCTCTATAAAAAAGCCCCAACCAATAGAATAcatgagaaaaaaaatgacaGATCCTTTTATAATATCTGACTTTTTCACATTACTAGAAAATACTTTGACTGATTTGAACTTATTTAAGAAACCAGATCTAATATGGAACTTAGACGAAACCTCTCTGTGCCTAGACCCGACGAAGATCAAAGTAGTTGGTAAAATTAATAAGCCTTGTTCGAGGACAACATGTGGGACcggaaaagaaaatattaccgTCTTAGCGGCCGTGAGTGCAActggaaaaaaaattactccTTTGATCGTATATAAAGGAAAACAGATGTGGGATCAGTGGATGGCAAAATTAGAAGGTTTTGATTTTGAAATATCATATGCAGCAAGTTCAAGAGGGTGGAGGATGacgaacatattttataattatcttgaAAAAATTTTGATTCCTGCACTCGGTAAAGAACGCCCAGTTCTATTAATTTTTGATGGCCATTCTACCCACGTAGACGCTAACGTTGTAGAACTGGcagtcaaaaataatatcacAATTTTAAAGCTTCCCCCTCATACTTCGCATTTACTACAGCCACTTGATGTGGCTgtgtttaaatcttttaaaagcaTGTGGGATAAGAAATTAGTTGAGTGGCAGCGGCATAATGTAGgtaaaaaaatgccaaaaaatgtttttgtgcAAACATTTGCTGAGACCTGGCAAAAAATTAACACTGAAGTTATTCAAAATGGATTCAAAAAATCCGGGATTTATCCATTTAATCGGAATATAATTCCAAATGACAAATATGAACCTGCTGcacttaaaagatataaaacacAGGTATGTAGAACTCCAAAATCACTTAGGTCTTTATGTATTGAAGTTCTAAATAGTAAAAGTAGTATCACAAGTAGTACTATTGACATCAGTGATCCACTCAAAGAAGAAACTTTTCATATATTGACAAATACACAGCTTAACACTGAAAATGTCACAATGTTAAGTGATCTTTCTGATAGGAAAGACAGTCAATTACTACCATTTACGGCAAGTCAAACGGCAAGTTTACCACAATGCTTGCAAGAGGAGAAAGAGAGTTCTGTAGTGAGTTTCGAAGAACttgtattagaaaaaatacaacaggGTAAACATAATATTccgttaaaaagaaaaagagtTGCTAAAGGAGCTGAAGTAATTACactcaacattttaaaaaataataaagaaaaagagcAGTTAGAGAAACacgacaaaaaactaaaaaagcctAAAACAAAGTTAGAAAGTATGCCCAGTTCTTCGAAATCCCTCAACACATctttcaaaacaattaaaaggcGACCGAGTGTTTATTCAATCAGCGGCTTAATGACTGATGATATTTTAAAcactaatgaaaatatttccgATTTTGAGATAGTGGCATGGGCTGATTCAGATGCTATTCATATGGATAATGAATtgaacaaagaaaatatatccaaatataatttaagccaAGCACATCTAGAAATAGAAAAAGACCAATACATTAAGAAAACTTTTTGCTCAAGACGTGAAGAATATGAAAAACCCATTACGATTTTAGACGAAAAAACAGGATGTATTCGATCTGAATTAGTGGCAGCTAGCAATGACTACGATGAACCAAAAAAGAATAAGAGAAcaaatgcaaataatataaCTACTCAACGAGAAGcacttacttatataaaaaaagacacATGTAAACAAAGAACCAGAAAACTTAAGAAACAGAAAAAGTGGGAAAATAGCTCGACCACTTCAGAAGATAATATTATGAGCGTTCATAGCGACAGTGATATAGATGAAATATTGAGCATAGATGACGGCGAAGAAGAtgaacagataataaaaaataaagttgataTGAAAGAAGCCATTATATTCGAAAATATTAGACGATTAGAGGAGATCGATAAGACTGTACAACTACATAAAACTGCGAGCGAATCTAAAATTGCAAAAAAGATGATGAATACTAAAGAAGAAGAATGTTTTTAtgaggaaaataataatatagtaaactctgtagtacaaaaaaataaagtaacagaaaCATTTGAGTTGGGCAAGACTATAatcgttaaatattatattaaaaaaaagtggaaGTATTATGTCGGTGTGATAACCGAAACAAATGATAACCAGCTCGACAAAAGGTGTAAAAGTTTCCAAAACACCAAGCGGGGCGAAATCTGCCGTATTCCAGGCTGCATCGTAACGCCATCTGTCGGGTCGACCACGCCGATACGGATGCCACACGTGCAACCAGAAACGTTTAGACTGTTTATACAATATGTTTATACTGGGAAGTTGCTTCTCCAAGATTCAGGTGTATTTGAAATGATGACCTTAGCAGCAGACCTAGGAGTGGAAGACCTAAGATCAGCCTGTGAAGATCATGTCACATCCACCTTGAACGTGGAAAATGCTTGCACTTTACTAGCTGCTGCAATGGATATACAAGATAGACCAGGACCACCGAAAGTACAAAAGGTGATGGTACAGCCCATTAACCTTATCTTTAGATATTTACAAAACAGAAGTCGTGTTCAAATTTGGCTTTACGAGAACGTGAATTTGAGGATTGAGGGTCACATCGTGGGCTTCGATGAATACATGAACATTGTGTTAGATGAAGCTGAGGAAGTGCATATGAAGACTAAAAACCGCAAGCAAATCGGCCGAGGTAAAAGTGCATCATCATTCATGGAACGCTGCATATCATTCATAGAAGAAAATGCACCTGAATGTGTCAAAAGTAATGCCTTCTTAAACTTGCCTAAAGAAGCCCTCATCAAGCTAATATCTTCAGATAatCTGCGGCTGGAGGAGAAAGACGTGTGGCGCGCGGCGCTGGCGTGGGGCAAGCAGCGCGCGGGCGTGACGCAGCCCACGGCGCACTGGGCGGAGGAGGAGCGCGCGCGCGTGGTTCACCACCTGGCGCCGCTCATGCAGCACGTGCGCCTGCTGCACATCGACAGCGTGGTGTTCGCGGAGGAGGTGGAGCCCACGGGCGCCGTGCCCATGGAGCTGTCGCTGAAGCGCTACAAGAGCGCCGCGCTGCACGCCGCGCCACCCGGCGCCACGCGCCGCACCACGCCCAGGATAGCAGTCAATCTGTTTGTGGACTCCGTGATCCTGCGCCAGGACAAGAGTGCCTTCCAGTCACTTCTCAACACctgGTGCGGCACGCCCAAGCAGACGTGGTCGCTGGTGTTCCGCGCGTCCACGCACGGCTTCAGCGCGCACGCCTTCCACGCGCGCTGCGACGGCGTGGCGCCCGTGCTGCTGCTCGTGCAGCTACCACGCGGCGAGATCATAGGCGGCTTCAGCACGTCTGGCTGGGCGGCGccgggggcgggggcgggcggctACGTGCCGGCCGAGCGCGCGCTGCTGTTCACGCACGATCCGCCGGCCAAGTACCCGCTCGTGAAGAACTCGTTCGCGCTCTGCTACCACCCTGAATGCGGCCCTATCTTCGGCGCGGGCGCGGACCTGCTGGTGGCGGGCAACTGTCACGCCAACAGCGACAGCTACAGCAACCTGCACTCGTACGGCGACCCGCTCGCGCCCGCCAGCCTCGTGCCCGACTACAACTTCACTGTGCGTGATTACGAGATATTCACCTTCGCTTGA
Protein Sequence: MPRTYIKKKIAPYTQEDMAKAIQAVVKGEMSMYAAAKIFRIPTTTLFGRIKKNSRAPKVGRPLAIPISCEQRLADAIATMEKWGFGLTRQEVLAIVADYVKKNNLSTPFNDSKPGPDWFINFKKRHGLSIKKPQPIEYMRKKMTDPFIISDFFTLLENTLTDLNLFKKPDLIWNLDETSLCLDPTKIKVVGKINKPCSRTTCGTGKENITVLAAVSATGKKITPLIVYKGKQMWDQWMAKLEGFDFEISYAASSRGWRMTNIFYNYLEKILIPALGKERPVLLIFDGHSTHVDANVVELAVKNNITILKLPPHTSHLLQPLDVAVFKSFKSMWDKKLVEWQRHNVGKKMPKNVFVQTFAETWQKINTEVIQNGFKKSGIYPFNRNIIPNDKYEPAALKRYKTQVCRTPKSLRSLCIEVLNSKSSITSSTIDISDPLKEETFHILTNTQLNTENVTMLSDLSDRKDSQLLPFTASQTASLPQCLQEEKESSVVSFEELVLEKIQQGKHNIPLKRKRVAKGAEVITLNILKNNKEKEQLEKHDKKLKKPKTKLESMPSSSKSLNTSFKTIKRRPSVYSISGLMTDDILNTNENISDFEIVAWADSDAIHMDNELNKENISKYNLSQAHLEIEKDQYIKKTFCSRREEYEKPITILDEKTGCIRSELVAASNDYDEPKKNKRTNANNITTQREALTYIKKDTCKQRTRKLKKQKKWENSSTTSEDNIMSVHSDSDIDEILSIDDGEEDEQIIKNKVDMKEAIIFENIRRLEEIDKTVQLHKTASESKIAKKMMNTKEEECFYEENNNIVNSVVQKNKVTETFELGKTIIVKYYIKKKWKYYVGVITETNDNQLDKRCKSFQNTKRGEICRIPGCIVTPSVGSTTPIRMPHVQPETFRLFIQYVYTGKLLLQDSGVFEMMTLAADLGVEDLRSACEDHVTSTLNVENACTLLAAAMDIQDRPGPPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKTKNRKQIGRGKSASSFMERCISFIEENAPECVKSNAFLNLPKEALIKLISSDNLRLEEKDVWRAALAWGKQRAGVTQPTAHWAEEERARVVHHLAPLMQHVRLLHIDSVVFAEEVEPTGAVPMELSLKRYKSAALHAAPPGATRRTTPRIAVNLFVDSVILRQDKSAFQSLLNTWCGTPKQTWSLVFRASTHGFSAHAFHARCDGVAPVLLLVQLPRGEIIGGFSTSGWAAPGAGAGGYVPAERALLFTHDPPAKYPLVKNSFALCYHPECGPIFGAGADLLVAGNCHANSDSYSNLHSYGDPLAPASLVPDYNFTVRDYEIFTFA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00248272;
90% Identity: iTF_00248272;
80% Identity: iTF_00248272;