Bdap003454.1
Basic Information
- Insect
- Brenthis daphne
- Gene Symbol
- -
- Assembly
- GCA_947093115.1
- Location
- OX352473.1:4262348-4272252[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.23 18 6.4 0.2 1 19 371 389 371 394 0.89 2 10 8.7 6.6e+02 1.5 0.0 2 8 402 408 401 420 0.91 3 10 0.032 2.4 9.2 8.2 1 23 483 506 483 506 0.96 4 10 2.3e-07 1.7e-05 25.4 1.9 1 23 510 532 510 532 0.98 5 10 0.1 8 7.5 0.1 2 23 540 560 540 560 0.96 6 10 0.00017 0.013 16.3 2.1 1 21 566 586 566 591 0.94 7 10 3.4e-05 0.0026 18.5 1.4 1 23 599 622 599 622 0.97 8 10 2e-05 0.0015 19.2 0.6 1 23 628 651 628 651 0.98 9 10 0.0001 0.0077 17.0 1.4 3 23 664 684 663 684 0.97 10 10 0.00019 0.014 16.2 3.0 2 23 691 713 690 713 0.96
Sequence Information
- Coding Sequence
- ATGTCTAATGGAAGAATTCTTTCAAATGGTTACCCGGTAAACCAACAAGGTGTAGAAATGAATATTTCTGAAGAGATGGTCAAGCCAGAATCATCAATAACAGAAATACTCTCATATTTTGACTCAATTTTGTTAGAAGGATGGTGTTATTATGTTACCAAGGCAGAGCTGATATTCAAACACATAAATATGTTAACTAGAAAAGAGGATATATGTTTTTCTCTCGATAATAATTTTTCAGTAAAGGTATCTTTCTCTCAGAGGCCAGAAATGTCTGTAAATGATACTCTCACTTCTGTATATGATATTAAAAATTATATGGAAACCTTACAAGCAACTATTTTATGCGAAGGAACAGGTATATATTATCGATCATACGCACCAAAGTGCACAGGACGTGTGTCTAGTAAACGTTCACGTCAAATTCCACGTTGTATGTGGTGTAGAACTCTTCGTAAGAGACTTCTAGTAAGAAAATTTACTGATGCTACTAAAATTACAATACAAAAAGCAAAAGAGGCTGTCGAAAAATATAAGAAACGATATAAGCGACTTGTTCTCAAGAGACGAATTTTAGATCAAGAGTTAATAACAGCAAAAGAGAATGCGCAAAGATCAGAAGAACTCATGAGAAATGTTATATCTGAACTACCTGACACTAAAAAACTGTCCATTTTGGAATATTTGAACGGATCAAAACTAGAAAATCATGGCATAAGCCATAACTACTTAGTAGAACACTTTAGGGAACAAGATCTACCAAAATTAGCGAACCTTCATCAAAATGAGTACGGACATATTTATAAAGAAGAAGTTGTAGATAATTTCATCGATTGTGGATCAGAAATTGTAATAAAGAATGAAATTAATATGGATGTGTCTTCAGATGTAATAGAAAATAATATGTCGCCAATAGAAAAATCATTAAATAAACCAATTTTAGAAATACAACCATTGACGTTGAAAAGTGTTGCCATATCTGTGTTGAAAAATAGGAAATTAGATAGTGACACAGATAAAAAATATTATTCAATAATTCAAGTGTCAGACGAAGAAATGTATGAGAGAATTGAAAAATTAAAAAATGAGGAGAACTTTTTGAAAGCTTCATACAAATGTGAATCTTGTGTGCTAGTTTTTAAAGATGAAAAGGAATTGGGAATGCATAATACTGATTTACATTTGCAGAAACCGCGTCACATGCAATGCACAATATGCAATAAGTTCATATTGTACTGGCGTCTGAACACCCACGAGGCCGCCCACAGGCAGGTGTACGGGTGCGCGACGTGCGGCGCGGTGTCGTGCGCCTCCGGCATGCTGGAGCACCTGCGCGGGCACGCCGTGCCGTTCAATGATTTGATTAATCTCAGAAAAACAGTAATGCTTCTCAATCCATCTTTAAAATCTAAAAAGAAAAAAATGGATGGTAAAAAAGAGTATGGATATAAGTGTTCGGAATGCAACAAGTGttttgaAAAACAATATCTAAGATATAAACACGTGTTGAAGTGTCACAGAGAAGGATTCAAATGTGAAACGTGTGGGAAGACGTTTACTTATAAAAACACTTTAAATAAACATATACTAGTCCACGAACTCCTACTACCAAGAGAAGAATGTCCAATTTGCAACAAATTGGTCAGGTCAGATCGTCTTAATGCCCATGCAAAGATACACTCGGACAGACAGCAGTTTTACTGCAACACCTGCGATAAGACGTTCGTATCGATGGATTCGTTTGAAAAGCATTTGAAGAATTCTAAAACGCACGCCCTTCATGATGTTTTGAAATACAAATGCACTCTCTGCTCTAAAGGATTTCGCACGTTGACTGCCTTAAAGGATCACATAAATTATTATCATATGGGCAAGACGGACTACAAGTGTCCTATttgtaataagGCTCTATCGACGCGTCGCGGCGTTACTCGACATGTAAGAAGAACTCATCAAGGTCTAAAAGAGAAGATTGGGGATAAGATACTGTGTCAAATTTGTGGGAAGACGTTCAGAGATAAGAAATGCCTGGTCGAACACGAGTTGATCCACACAGGGGAGAAACCGCTCTCGTGCGACATCTGTTCTAGAACTTTCCGTCAGAGTGCATGTCTCTATACACACCGTCGTCGCGTACATAATATGCCCGCCCGCAGGATTGTACATACTGGTGATGATGTACATCCGAGCGATGGCCAAAACGGACAGTCTCACTGA
- Protein Sequence
- MSNGRILSNGYPVNQQGVEMNISEEMVKPESSITEILSYFDSILLEGWCYYVTKAELIFKHINMLTRKEDICFSLDNNFSVKVSFSQRPEMSVNDTLTSVYDIKNYMETLQATILCEGTGIYYRSYAPKCTGRVSSKRSRQIPRCMWCRTLRKRLLVRKFTDATKITIQKAKEAVEKYKKRYKRLVLKRRILDQELITAKENAQRSEELMRNVISELPDTKKLSILEYLNGSKLENHGISHNYLVEHFREQDLPKLANLHQNEYGHIYKEEVVDNFIDCGSEIVIKNEINMDVSSDVIENNMSPIEKSLNKPILEIQPLTLKSVAISVLKNRKLDSDTDKKYYSIIQVSDEEMYERIEKLKNEENFLKASYKCESCVLVFKDEKELGMHNTDLHLQKPRHMQCTICNKFILYWRLNTHEAAHRQVYGCATCGAVSCASGMLEHLRGHAVPFNDLINLRKTVMLLNPSLKSKKKKMDGKKEYGYKCSECNKCFEKQYLRYKHVLKCHREGFKCETCGKTFTYKNTLNKHILVHELLLPREECPICNKLVRSDRLNAHAKIHSDRQQFYCNTCDKTFVSMDSFEKHLKNSKTHALHDVLKYKCTLCSKGFRTLTALKDHINYYHMGKTDYKCPICNKALSTRRGVTRHVRRTHQGLKEKIGDKILCQICGKTFRDKKCLVEHELIHTGEKPLSCDICSRTFRQSACLYTHRRRVHNMPARRIVHTGDDVHPSDGQNGQSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00160140;
- 90% Identity
- -
- 80% Identity
- -