Bdap003421.1
Basic Information
- Insect
- Brenthis daphne
- Gene Symbol
- -
- Assembly
- GCA_947093115.1
- Location
- OX352473.1:4051786-4052607[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.8e-10 1.6e-07 31.3 0.0 2 38 9 46 8 52 0.91 2 3 4.6 2.6e+03 -1.4 0.0 9 18 51 60 48 60 0.85 3 3 3.4 1.9e+03 -1.0 0.0 25 37 84 97 83 102 0.74
Sequence Information
- Coding Sequence
- ATGCCGAAGAGAAAGTTATGGGATCCTCAAGCAATGAAAAAAGCCGTAGAAGCGGTCCGAACTAAAGATATGGGGTATAAAAAGGCAGTTAAGTTAtttaatgtgccaagagctactttaaaagattatgtcaaaaagtctgataaatctgttgatgatatagtttctggaaaaatgggaagaaaaccgattttgccagttgaattagaagaggagttggtaaactattgcctacaaatggaaaagaattactatggtgtcgccgcttcggacttaaaacgtatggcttttcaattggctattagaaataacattccacatccattttcacatactaaaaagaaagcaggtaaaaaatggatgaagttatttatggctcgccatcccaatttgtcgtttcgtcaaccacaatcgttatcacgtgctcgcgtgcaaggttttactgctgaaaatgttaaatctttttttgatatactgaaacctgaattagaaaagattaatttcaaccccaataaaatatttaatgtcgacgaaacagggatcagcatagttcagcATAAAGTAAGAAAAATCTTAACCGGATGTTGCTATCAAAACTGGTCTGTGAAATTGGCAAATGCGCTGCTAGAATTGGCAATTGAAAAAAACATTATTATTGAGCAAAAAAAACCTGAAGTCGGCCACACCCAAATGGAGGTGGACTTGATCCACAGTACCATAGAAAGAAAATTACCGCCACATAAGGAAATATTTATCCTTGTCGGCTACCTAAATATCATAAAAAGCGCCAGAAAAAAAAACTATACAAAGTTATTTTCTTAA
- Protein Sequence
- MPKRKLWDPQAMKKAVEAVRTKDMGYKKAVKLFNVPRATLKDYVKKSDKSVDDIVSGKMGRKPILPVELEEELVNYCLQMEKNYYGVAASDLKRMAFQLAIRNNIPHPFSHTKKKAGKKWMKLFMARHPNLSFRQPQSLSRARVQGFTAENVKSFFDILKPELEKINFNPNKIFNVDETGISIVQHKVRKILTGCCYQNWSVKLANALLELAIEKNIIIEQKKPEVGHTQMEVDLIHSTIERKLPPHKEIFILVGYLNIIKSARKKNYTKLFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -