Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: pacC
Assembly: GCA_016920775.1
Location: JAFDOW010000093.1:1052315-1056298[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00058 0.029 14.7 0.7 1 23 50 72 50 72 0.97

2 17 0.00089 0.045 14.1 2.4 1 23 114 136 114 136 0.98

3 17 1.7 86 3.7 0.2 1 15 178 192 178 201 0.90

4 17 0.0061 0.31 11.4 1.5 3 23 259 280 257 280 0.96

5 17 0.29 15 6.1 1.2 1 21 391 410 391 411 0.86

6 17 0.00042 0.021 15.1 0.2 2 21 419 438 419 439 0.94

7 17 6.2 3.2e+02 2.0 0.2 3 13 452 462 450 468 0.85

8 17 0.012 0.59 10.6 0.4 3 23 530 550 528 550 0.96

9 17 0.34 17 5.9 0.2 3 23 689 709 687 709 0.96

10 17 0.29 15 6.1 0.8 2 23 745 766 744 766 0.95

11 17 0.22 11 6.5 4.9 2 23 890 911 890 911 0.97

12 17 0.00058 0.029 14.7 2.4 1 23 953 975 953 975 0.96

13 17 1.5e-05 0.00073 19.7 0.1 2 23 982 1004 981 1004 0.95

14 17 2.2e-05 0.0011 19.1 3.2 1 23 1010 1032 1010 1032 0.96

15 17 0.044 2.2 8.7 0.4 1 19 1038 1056 1038 1060 0.93

16 17 4.2e-06 0.00021 21.4 4.3 1 23 1066 1088 1066 1088 0.99

17 17 0.012 0.63 10.5 1.6 1 23 1095 1118 1095 1118 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00058	0.029	14.7	0.7	1	23	50	72	50	72	0.97
2	17	0.00089	0.045	14.1	2.4	1	23	114	136	114	136	0.98
3	17	1.7	86	3.7	0.2	1	15	178	192	178	201	0.90
4	17	0.0061	0.31	11.4	1.5	3	23	259	280	257	280	0.96
5	17	0.29	15	6.1	1.2	1	21	391	410	391	411	0.86
6	17	0.00042	0.021	15.1	0.2	2	21	419	438	419	439	0.94
7	17	6.2	3.2e+02	2.0	0.2	3	13	452	462	450	468	0.85
8	17	0.012	0.59	10.6	0.4	3	23	530	550	528	550	0.96
9	17	0.34	17	5.9	0.2	3	23	689	709	687	709	0.96
10	17	0.29	15	6.1	0.8	2	23	745	766	744	766	0.95
11	17	0.22	11	6.5	4.9	2	23	890	911	890	911	0.97
12	17	0.00058	0.029	14.7	2.4	1	23	953	975	953	975	0.96
13	17	1.5e-05	0.00073	19.7	0.1	2	23	982	1004	981	1004	0.95
14	17	2.2e-05	0.0011	19.1	3.2	1	23	1010	1032	1010	1032	0.96
15	17	0.044	2.2	8.7	0.4	1	19	1038	1056	1038	1060	0.93
16	17	4.2e-06	0.00021	21.4	4.3	1	23	1066	1088	1066	1088	0.99
17	17	0.012	0.63	10.5	1.6	1	23	1095	1118	1095	1118	0.96

Sequence Information

Coding Sequence: ATGACCGAATTTCAATTTGTAAACACCGAACATTTCGACTCGAAAACATTGAGCGATAATCGGTATTTTTGTGCGATTTGTGATCGGAAACTAAATGACATCCGACTGACCGATGAAGATTTTGATCGATTCAAGACCAAGCACGGATACAATTGCAATATCTGCTATAAAGTCTACCGCAACCTAAGCGCGGTAAAGGAACACCAAAGCCAACATTTCAACGAGACTGACTTCAAAGTTGCATGCATCGATTGCACGAATTTATCGAAAACACTCGACACTGGATGTGATATCCTGGAAATCGGggaaatttacacgaaaaacgATGTCCGGTCAGAGTTTTATTGCGAGAAGTGTGATCGCTTTTTCGATGTTCGGAGCAAGTATGTTCAACATTTACGCAATCATTATGACCGAACGGTATACACCTGTGATTATTGCAATGGCATCAAAATTATTGGATGGGAGAGgTGGAACATTCACAAAACTACCGCTCACGAAGATATGGAACCATCGGCCGTAGACCTTTCATATAAGTGTAGCGTTTGCTCCACAGTCATTACTCAGTCATCACAGAACATATCCGAGTTTCAAAAACATCTATCGCATTGCCAGTCATTGAACAGTGAAAAGCCGATTAATCTGCACGATGGTGATTCGACGTACTGTGGCGTCTGCTGTGTGGAAATGCCAGAAATACGTACCATTCAACAGCAACTAGAGACTGAAAATCATGACACTGACTACTACCGGACGAGTTTCGAAACGATGAATTGCCTAATGTGCCACCGGGTGTTTATGTCGACGGGGGATCTGTACGATCATCAACGCAAAGACCATTTTGCCAGtaaatatgaaaatcggttCGCGTGCAGTCGATGCCTgagtaaatcgaataaattcgCACACATTTCCAATGAACGAATTTCAACTGGTCCCACGACGAAgggaaaaactttttgttcCATTTGCGATAAGTCAATTAAGGTGACATGTTGGTCGCGACACGTTCGCAATCATCGTGATCGTGTTGTCTATCAGTGTGAAAGTTGCCGAAAGATTCGAATCGGTTTCTTTCGCTTTCAAAATCACTTTCGTCAGAGTTCGAAGTGCAGCAATTCGATGGAGTTAAACAATGAAAAGCCGGATAAGGAGccgaaaaattacattttccaatGTGACCGATGCAAGGGAACGTTTTCGCGGCGATCGTTCAAATCGCACATCAACGAAAGTGATTGTTACGTGGACAATCGGTGCGAGAATTGCCCGAAGCAATTCATCACAAAAGCTGCGTTAAACAAACACCGACTGGTCGACTGTGGGAAAATTAAGAAGGAATTGAAATTGGATTGTGCGACATGTGAAAAATCCTTTCACACGCGACGGATTTTTGCGTTGCATTCGACTGTGTGCCAAGGGAAACAAAGGACAATCCGTTGCAACATTTGCAGAATTTTTGTAGAATCCGATTCGAATCATTGGAATGACATCCATCGTCGAAGATGTGTGGTCGAACTCAATCGTGCAGCAGACCCAGTATTAGAAACTAAAAATCGTCCTCCACCTACGGGAGTTCAATTTGGTTGCTTGCTGTGTGATGATACATTTGCCGATCGTCAGCAGCTGAGATTACACATGAGCAGTCATTATTGCGACAAGTTTACCTCGACGGTTGACGACAGTCAATGTGACACAACTTCGGATTCATTTGATACAGAGCCTAAGTATGTGGAAACTTTAAAGGATGAACGATTGATATCGTCGCCAACGACCACCGGCGAAAATgataacaaatttcaaattttgaccTCATCCGAATTTGTAAAGACAGAGGCAACGGTTAGCATTGATAACATGTGGACGTCCAATTGCGATGATTTTAACGATTTCGCGAACGACGATTGCGAAGAAATTAATTACGCAGCCAACAGTAACGATGTGATACAATACAATGTGACGATGGGAATGACACAGTGTTGTCTGTGTAAGAATGTGATTCCTGACCTAGTCAATACGGACGAAGCGGTGCACGAACAGATCTCCAGATTCGGTGAAACAATTTGTCTAATTTGCTTCCAGTTGTTCAGTCTGCCGGAAAAATTGCGGGAACACGAATCGACTCACTTTCAAGAAAATCTTGATGGACATTTAATCGCATGCCGATCATGCGCCTGGTCATCCAACGTTTACTACACGGACACGGACTTTTTCCGCCTAGAAAGGGACCTTCAGTGCTATGTGTGCTCAGCGAAAATGGCTGACCTACGAACTCTACGCCGACACAAGCGATCACATCTCAGTCTGTGCGTGTTCACCTGTAAAGTTTGCAACAAGAAAAGCATTTCCGACGAACGGCATAAAAATCATTTGCGAAAACATCAAAAGCCAGAACTGGCAGTCGTAACGAATCAAATTGTCCGGAAGTGTACTCTTTGCGGCGAAGAGGCGACAAATTTGTATCGTGATGAGAAGGACATCGATCGAATGTTTGAAAAGTTTAAGGGTGGACCGTGTTTGATTTGCTTCACCTATATCAACGACAAAAAGCGGTACATATCTCACGAACGAAGTCACATGGAAGACCAGCAACTAGTATCCTGTTTCAAGTGTTGCAACACTAAATCCTACACTGACGACGAATATCATCGACTGGAAGACGAGAACACCTGTTTCCTGTGCAAGGCAAAACTTTCGTCCAAGTACAATCTTCATCTACACAAGCGGAAACATTTAGATCGCGTCGTCTATTCGTGCACGATATGTTTGTCGCTAGTCGTCGGTACACGGAACCACAGTCATCATATGTACAAACATGGTCTGCGTAAGAAGATTCGCGAAGAAGTAGCCGGTCGGTACCAATGTGACTATTGTCAGAAAATATTCCCTCACAAAAGTTCCCTGCCCGCTCATTTCAAGCAACACTTGAATAAGCAACGTGTACCGTGTCCGCAGTGCCCGTTAACGTTCGCTAGCAAGGGAAACTTGACGCAGCACATCAAACAAATTCACCTTAACATTCGGAAACATATTTGTGAGCTGTGCGGTAAAGCGTTCGGTCATCCGCATAATTTGAAGAGTCACATGGTCAAACATTCGGGCGAAAAGcCCTACCAATGCCCGATTTGTCTGAAACGGTTTGGATACTACAGTCGTATGAAAACGCACGCTTGGATACATAGTGGGCTCAAGCCGTACAAATGCGACCAGTGTGACAAATGCTACAACGACTCGACGGATCTGCGTCGACACAAGCGAATACACGGCGGTGTGGAAAAGAAATTCGAGTGCGAACTGTGCAAGATTAAATTCTACGAGCATAAGTACTTACGTGCTCATAGAGCATCGGCTCATAAGTTTTTGGTGCAGTAA
Protein Sequence: MTEFQFVNTEHFDSKTLSDNRYFCAICDRKLNDIRLTDEDFDRFKTKHGYNCNICYKVYRNLSAVKEHQSQHFNETDFKVACIDCTNLSKTLDTGCDILEIGEIYTKNDVRSEFYCEKCDRFFDVRSKYVQHLRNHYDRTVYTCDYCNGIKIIGWERWNIHKTTAHEDMEPSAVDLSYKCSVCSTVITQSSQNISEFQKHLSHCQSLNSEKPINLHDGDSTYCGVCCVEMPEIRTIQQQLETENHDTDYYRTSFETMNCLMCHRVFMSTGDLYDHQRKDHFASKYENRFACSRCLSKSNKFAHISNERISTGPTTKGKTFCSICDKSIKVTCWSRHVRNHRDRVVYQCESCRKIRIGFFRFQNHFRQSSKCSNSMELNNEKPDKEPKNYIFQCDRCKGTFSRRSFKSHINESDCYVDNRCENCPKQFITKAALNKHRLVDCGKIKKELKLDCATCEKSFHTRRIFALHSTVCQGKQRTIRCNICRIFVESDSNHWNDIHRRRCVVELNRAADPVLETKNRPPPTGVQFGCLLCDDTFADRQQLRLHMSSHYCDKFTSTVDDSQCDTTSDSFDTEPKYVETLKDERLISSPTTTGENDNKFQILTSSEFVKTEATVSIDNMWTSNCDDFNDFANDDCEEINYAANSNDVIQYNVTMGMTQCCLCKNVIPDLVNTDEAVHEQISRFGETICLICFQLFSLPEKLREHESTHFQENLDGHLIACRSCAWSSNVYYTDTDFFRLERDLQCYVCSAKMADLRTLRRHKRSHLSLCVFTCKVCNKKSISDERHKNHLRKHQKPELAVVTNQIVRKCTLCGEEATNLYRDEKDIDRMFEKFKGGPCLICFTYINDKKRYISHERSHMEDQQLVSCFKCCNTKSYTDDEYHRLEDENTCFLCKAKLSSKYNLHLHKRKHLDRVVYSCTICLSLVVGTRNHSHHMYKHGLRKKIREEVAGRYQCDYCQKIFPHKSSLPAHFKQHLNKQRVPCPQCPLTFASKGNLTQHIKQIHLNIRKHICELCGKAFGHPHNLKSHMVKHSGEKPYQCPICLKRFGYYSRMKTHAWIHSGLKPYKCDQCDKCYNDSTDLRRHKRIHGGVEKKFECELCKIKFYEHKYLRAHRASAHKFLVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00245888;
90% Identity: iTF_00245888;
80% Identity: -