Bodo015608.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000525.1:2318444-2321549[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.001 0.053 13.9 0.8 1 23 130 153 130 153 0.94 2 13 0.74 37 4.9 0.5 1 20 235 254 235 255 0.88 3 13 0.07 3.6 8.1 0.4 1 20 288 307 288 309 0.94 4 13 0.14 7.3 7.1 8.4 1 23 332 355 332 355 0.95 5 13 0.81 41 4.8 1.9 2 19 369 386 368 394 0.88 6 13 0.48 24 5.5 0.2 1 14 416 429 416 438 0.75 7 13 0.19 9.4 6.8 1.6 1 23 442 467 442 467 0.96 8 13 0.16 8 7.0 3.9 1 21 473 493 473 494 0.95 9 13 5.2e-05 0.0026 18.0 1.4 1 21 501 521 501 522 0.96 10 13 0.00022 0.011 16.0 3.6 1 23 529 551 529 551 0.97 11 13 2.2e-05 0.0011 19.1 0.3 1 23 557 579 557 579 0.96 12 13 0.00037 0.018 15.3 3.0 1 23 585 607 585 607 0.98 13 13 0.0061 0.31 11.4 7.5 1 23 613 636 613 636 0.95
Sequence Information
- Coding Sequence
- ATGAATTTAAAATTGGATATTGATCCGCACTCCGTCTGTCGAATTTGCTTGTCGCAAAAGTCGCTGACAAACAATTTAATCAATTTCTTCTCAAATGTTGTTGTTGAGGGATACATTATATCGGTTGCAGATATGGTAATGAAGTGCTTGGACATTGagtCCGATGCCAACGATGGACTTCCCGACAAAATTTGTGATGTGTGCAAAAGAGAGATCACCAACTTCCATCTGTTCAAAGAGAAATCCGCTCggaccgaaaaaattcttttgaacgAATTTGACAAACCGCCCCGGAAGAAGGAACCGAATCGACGTTCATCGGTCGAAGCCACCGCAAAGCCACAAACAGCAACAGTTGGCATTCAAACGGTGACCGAGCATCCATCGTTTACGTGCTTGGAAtgcaaaatgatttttaaaaccGAAACCATGCTGAGCAAACACATCAGTGGGAAACATTCCTCCGAAAAAACGGAAGCTGGCTGTCAAACGGATGAGGTGTCGATAATGCCCGAGGAGATTTACATCGACGAAATACCCGAATCGGTCGAGATGAATTACAAACGagaaatgaaaatggaattgCTTGAAGTGGAAGACATTGACATGGACGACATAAACGCGGAGTTGGAGGAAATGACAAGCGAACACAAGAGTGATTATCATGAAGACTATGAGATCATTGAAAAGGAGCAAGAAGAGTACCAGTGCAACGATTGCCTGGAAATTTTCCCACTGGTCGAATTGTTCGAGAATCACAAATGTCCCAGCAAAATTATCGTGCAAATCGTTAATGAAGCGGCTGAATCCGACGATATGTCTGATAATTACGGCGAGGATATGTTAAACGAAGATGATTGCTATGAATGCTATCGTTGCCATGCCACCTTTGCTAACGTCGACGAATTCTCATCGCACCGTAGTGCCAACGATTGCCAGCAATTCGACCTAGCGATGAAAAGTCCAAGCCAAAGAACTAAACCGGAAGAGTACCACCATTGCAGTTTGTGTAAAGATAAACGCTTCAAGACCAAATCCACGTTCAACCAGCACCAGAAGCTGCACGAGTCCATTGAACGTGTCATCGAATATCTGGACTGTTCGTCCTGCGACGATTGTCACAAGATGTTCCTAACGAGTGACGATCGAATGCAACATGAATGTCCGAAGAAAAGGAAGAACAGCGATGGCGAGTACATTGACGAATCGTGCACCGACTATCAGTACCTGGAGCCGGATGTCGATTTTTCGTGCGACAAATGTCCGATGGAATTTACCAATGTGAACATTGCGAAGCTGCACGTCATCACTCAtgcaaaagaattcttttgccCCTTCCGAGATTGCGGTTGTTCGTACGAAATATGGTCGAGATTTGCGATGCATTTGAGTACGAAACATCTGAATGAGAAGCACCATCAGTGCAAATTTTGCGACGAAGAATGCCATTCGTTCGACGATCTACAGGCCCACTACAAAGATCGGTGTCCGGAGAAGAAATTCAAATGTGACCACTGTGACAAGTCCTACTTTTCGCAGAAAGCCCTAAACTTACACATCAAGGACATAACTAAGGGAAAGACTTTCAATTGCACGCATTGCAGTAAATCGTTTAACCGACGCGGTGAACTCGATCTACACAATCGATCCCATACCAATGAGCGGCCGTACAAATGTACGATTTGCGATAAGGCATACAAAACATCAAGTATGCGTGCGGCTCACATGGACGCTCATATCGAGGGAAAGACATTTCCATGCACCATGTGCGACAAAAAGCTACAGACCAGAACGAGCTACCGCAATCATATGAAACGCCATACAGAAGAGAAGAAGCATCAGTGCGAACACTGTGGCAAGAAATTCTTTACCAAATTTCACGTCAAATTGCACGCATCAAAAATCCATGCGAAGGGGAAGTACAAACCGCTCAAGGTGCCGTCGAATGTCATACAAATTGAATATGAAGACATTGTGGATACGCTGGACGATGAACAGGTTGTGTCGTCGTACGGATAA
- Protein Sequence
- MNLKLDIDPHSVCRICLSQKSLTNNLINFFSNVVVEGYIISVADMVMKCLDIESDANDGLPDKICDVCKREITNFHLFKEKSARTEKILLNEFDKPPRKKEPNRRSSVEATAKPQTATVGIQTVTEHPSFTCLECKMIFKTETMLSKHISGKHSSEKTEAGCQTDEVSIMPEEIYIDEIPESVEMNYKREMKMELLEVEDIDMDDINAELEEMTSEHKSDYHEDYEIIEKEQEEYQCNDCLEIFPLVELFENHKCPSKIIVQIVNEAAESDDMSDNYGEDMLNEDDCYECYRCHATFANVDEFSSHRSANDCQQFDLAMKSPSQRTKPEEYHHCSLCKDKRFKTKSTFNQHQKLHESIERVIEYLDCSSCDDCHKMFLTSDDRMQHECPKKRKNSDGEYIDESCTDYQYLEPDVDFSCDKCPMEFTNVNIAKLHVITHAKEFFCPFRDCGCSYEIWSRFAMHLSTKHLNEKHHQCKFCDEECHSFDDLQAHYKDRCPEKKFKCDHCDKSYFSQKALNLHIKDITKGKTFNCTHCSKSFNRRGELDLHNRSHTNERPYKCTICDKAYKTSSMRAAHMDAHIEGKTFPCTMCDKKLQTRTSYRNHMKRHTEEKKHQCEHCGKKFFTKFHVKLHASKIHAKGKYKPLKVPSNVIQIEYEDIVDTLDDEQVVSSYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245837;
- 90% Identity
- iTF_00245837;
- 80% Identity
- -