Bodo006266.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000900.1:2615363-2617661[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.14 7.1 7.2 0.3 2 23 233 251 232 251 0.79 2 7 2.9e-05 0.0014 18.8 7.5 1 23 257 279 257 279 0.98 3 7 0.034 1.7 9.1 5.9 1 23 285 307 285 307 0.99 4 7 3.5e-05 0.0018 18.5 2.5 1 23 313 335 313 335 0.99 5 7 2.2e-06 0.00011 22.3 0.3 2 23 341 362 340 362 0.95 6 7 2.6e-05 0.0013 18.9 0.2 1 23 368 390 368 390 0.99 7 7 0.001 0.051 13.9 0.2 2 23 398 419 397 419 0.96
Sequence Information
- Coding Sequence
- ATGGACGACTTTAGTAAAATGTGTCGTTGCTGCGCCTTACCGAGTGATGAATTGAGTCcaatgttaaaatgtggaaataCAGATGAAGATATACCTAGCATGTTCAAAGAATGTTTCAATCTTGAGATTGACTGTACCAATTTACTACCAGTATCCATATGCGCGACATGCTACAAAAAGCTTCGTTATTCGGTCCAATTCAAAGAGATGTGTATTTCGTCATTCACATTTCTCACCGAGTATTTGGAGAAGCAGAGCATCACTCTGATCAAAAACGAAAACTTCGAGGATGATGCGTACACCTTTGCTTCGTGTCTCAATGATGATACGCCGGACAAAACAATTGAAGAAACTAAACATAGTGTGCAGAGTCATATCGAAGAAGAAGCTGAACTGCCGAAGGAAAAACTACTGAAGAAACTTCACAGAACGTACTTGGGTCCCAAATCAAGGAAGAAGAATAATACGAACAAAAAACCTAATATCGACGAAGCTGAACTGCCGAAGGAAAAACTACTGAAGAAACTTCACAGAACGTACTTGGGTCCCAAATCAAGGAAGAAGAATAATACGAACAAAACACCTAATATCGACGAAGAGGAGAAGGAGACAGACTTTACGGTGGAAGATCGTAGCAGCAATGTTGAATCAACCAAAAATTCGaaaacgaaaggaaaaaaagagaaagtCGGAAAAATGTGCCAGATTTGTGGACAAATATTCAAAAGTCTTCAGGCACACTTGTATGTCCATGACATTTTCCCGAAGTTTGAATGCAATATTTGCCACAAGAAATTCCGACACAAAGCAAATGTTCACAGTCACATGAAGATTCACACAAACCAAAGAGACTTCAAATGCCATCAGTGTCCCTACAAAACACAGTTTCGTACCTCATATCTACGTCACTTACAAACGCACACAAACGAGCGTAACTACAAGTGCACCATCTGTGAAAAGCTATTCACCCGGAAAATGACACTGGACCGGCACAAACTAACACACGATCTGCCTCGAGTTCCTTGTCCACACTGTGACAAAATGTTTACGACCAAAAAAGGACTGGTTAATCACATCGGCATTCATACCGGAGAGCGTCCATTCAAATGTAAAATATGTGGAATGGGATTTGTGGCGACGTCTTCGCTGTCTGTGCACAGAAGAATTCATAAAAAGGAAGACAATTTGTTGCGGTGTAAAGAGTGCGGACTGGTCTTGGCTAACTTACAGATGCTGTACAACCACATGAAAGATCATAACGTTCCATCGACGGCGGAAATGTTTCTGACAGAGGTGGAAGTGGTGACTACATCGACCAAGAAGGAAATCGGTTTTCAGGATGAGGATTGA
- Protein Sequence
- MDDFSKMCRCCALPSDELSPMLKCGNTDEDIPSMFKECFNLEIDCTNLLPVSICATCYKKLRYSVQFKEMCISSFTFLTEYLEKQSITLIKNENFEDDAYTFASCLNDDTPDKTIEETKHSVQSHIEEEAELPKEKLLKKLHRTYLGPKSRKKNNTNKKPNIDEAELPKEKLLKKLHRTYLGPKSRKKNNTNKTPNIDEEEKETDFTVEDRSSNVESTKNSKTKGKKEKVGKMCQICGQIFKSLQAHLYVHDIFPKFECNICHKKFRHKANVHSHMKIHTNQRDFKCHQCPYKTQFRTSYLRHLQTHTNERNYKCTICEKLFTRKMTLDRHKLTHDLPRVPCPHCDKMFTTKKGLVNHIGIHTGERPFKCKICGMGFVATSSLSVHRRIHKKEDNLLRCKECGLVLANLQMLYNHMKDHNVPSTAEMFLTEVEVVTTSTKKEIGFQDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -