Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: -
Assembly: GCA_016920775.1
Location: JAFDOW010001071.1:82381-91105[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.5 76 3.9 0.3 2 23 210 234 209 234 0.91

2 9 2.7e-05 0.0014 18.8 1.6 1 23 266 288 266 288 0.95

3 9 0.00041 0.021 15.1 1.2 1 23 296 319 296 319 0.95

4 9 7.6e-06 0.00039 20.6 0.3 2 23 328 350 327 350 0.96

5 9 0.0097 0.49 10.8 3.7 1 23 356 379 356 379 0.96

6 9 0.93 47 4.6 0.3 2 21 386 405 386 406 0.93

7 9 0.0034 0.17 12.2 0.0 3 23 418 439 416 439 0.96

8 9 8.5e-06 0.00043 20.4 2.2 1 23 444 466 444 466 0.97

9 9 2.4e-05 0.0012 19.0 2.7 1 23 472 495 472 495 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.5	76	3.9	0.3	2	23	210	234	209	234	0.91
2	9	2.7e-05	0.0014	18.8	1.6	1	23	266	288	266	288	0.95
3	9	0.00041	0.021	15.1	1.2	1	23	296	319	296	319	0.95
4	9	7.6e-06	0.00039	20.6	0.3	2	23	328	350	327	350	0.96
5	9	0.0097	0.49	10.8	3.7	1	23	356	379	356	379	0.96
6	9	0.93	47	4.6	0.3	2	21	386	405	386	406	0.93
7	9	0.0034	0.17	12.2	0.0	3	23	418	439	416	439	0.96
8	9	8.5e-06	0.00043	20.4	2.2	1	23	444	466	444	466	0.97
9	9	2.4e-05	0.0012	19.0	2.7	1	23	472	495	472	495	0.97

Sequence Information

Coding Sequence: ATGGATTCAATGTCAACAAGACTTTGTCGTTTGTGTCTCGAATCGAGCGATGAaatgataaatattttcgaaaacccTCAAAACTCGGCAATCCCGtcgattttgatcaaacatttcTGGTTCCAGGTTGACAAAAATGATGGTATGCCGCAGTGGCTGTGCGAAATTTGTTGGATACAAACCAAAACGTTTCACCATTTCTATAAAAGAGTGGAGATCCGCCACGGAAACTATAGCAGCTCAAATGCCTTGGTCAATTCAATAAAGCAAGAACGAAGTGAAAGTCCAATCGAGGAGCAAAAAAACCATGAATCTTACACGGACATGTATATAGTGAAGCAGGAAGAACCAGACCCTCCAGCACAAACACCGCACCTGTTAGAAACCAAAGAAGAAAACTGCGAAGACAATGCCTTTGGTTACAATGATGGCTACAATCTTGGCgaaaGTGAAAATTCGCAGACCTCAGACGAGGATGGCCAACCGTTTAATAAAAAATCGAAGAACCACGGCACTGTAGATGTCAGCGCTTCATCGACACTAAATACTGAAACACAAGACTCACGATCCACTAGGCTTTTGAAAATAGCCCAACAAGACGCTCAGATCCGTGATTTTTTCACGATGAAATGCGAAATGTGCACCGAAgacatcaaatttgaaaatttgacgaatgcCAGAGATCATTATCGCAGCGTTCACAATAAAAGTGGATATCTAATGTGTTGTGGTAACAAGTACCATCGTCGTTACCAAATACTGGGTCATATCAGCTTTCACATCAATCCAGATGCATATCAGTGTGATCAGTGCGATAGAATTTTTAAAGATCGACACGCACTCAAAACTCACGCCGACAATCATGTGCCACTTAATTTACGTCCTCATAAATGCAGCTTATGCAACAGTAGTTTTACCAAGGCGGGTTCTTTAAGGGTTCATGTGCAAAATATTCACTTGTCGGTTACGGGTGAAATGTTGCCCTGTGATAAATGCAGTAAGACTTTTCGATCTCCCACATCGTTGGCCTCTCATGTTCGAAGTGTGCATGAGTTTTCTCTGGAGCACGTATGTGACATATGTGCTCGCCGATTTAAAACAAAGCAACTACTCAAATGTCACATCATGTCCGAACATTCAACGACGACTAAGGCTCAGTGCGAGATGTGCGGAGCTTGGCTGAAACATGCACTGAGTCTGCGTAAACACTTGAAACGGTGTCCGCAGTCGTCAAATTGCGAGCCAGTCAATTGTCCTATTTGCGACAGAGTGGTACCAAACAGACCTGCATTAAGTGGCCATATTCAGCGTGCTCATGGGACAAAAAGACACCAGTgcacattttgcgacaaaacaTTCAAGACACCCAAAGGATTAAAGGAACACACAGCAATTCATACGGGCGAATACTTATACGATTGTCAGTACTGCGACAAGAAATTCAAATCGAATGCGAACATGTACTCACATCGCAAGAAGATTCATTTGGAAGAATGGACCAGAGATAAACCCAAGACAAACACATCAGTGGAAAAGTTGCATCCCGTTGAACCGGGAGAGGCTGAAATGACAGGCGAACCCTTTTAG
Protein Sequence: MDSMSTRLCRLCLESSDEMINIFENPQNSAIPSILIKHFWFQVDKNDGMPQWLCEICWIQTKTFHHFYKRVEIRHGNYSSSNALVNSIKQERSESPIEEQKNHESYTDMYIVKQEEPDPPAQTPHLLETKEENCEDNAFGYNDGYNLGESENSQTSDEDGQPFNKKSKNHGTVDVSASSTLNTETQDSRSTRLLKIAQQDAQIRDFFTMKCEMCTEDIKFENLTNARDHYRSVHNKSGYLMCCGNKYHRRYQILGHISFHINPDAYQCDQCDRIFKDRHALKTHADNHVPLNLRPHKCSLCNSSFTKAGSLRVHVQNIHLSVTGEMLPCDKCSKTFRSPTSLASHVRSVHEFSLEHVCDICARRFKTKQLLKCHIMSEHSTTTKAQCEMCGAWLKHALSLRKHLKRCPQSSNCEPVNCPICDRVVPNRPALSGHIQRAHGTKRHQCTFCDKTFKTPKGLKEHTAIHTGEYLYDCQYCDKKFKSNANMYSHRKKIHLEEWTRDKPKTNTSVEKLHPVEPGEAEMTGEPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -