Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: -
Assembly: GCA_016920775.1
Location: JAFDOW010001452.1:2910493-2915821[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.3 1.7e+02 2.8 0.4 2 23 354 376 353 376 0.91

2 9 0.00025 0.013 15.8 0.4 1 23 382 405 382 405 0.97

3 9 0.14 7.3 7.1 5.6 1 23 439 461 439 461 0.94

4 9 9.4e-06 0.00048 20.3 0.9 1 23 470 492 470 492 0.98

5 9 1.1e-07 5.4e-06 26.4 0.3 1 23 498 520 498 520 0.99

6 9 0.065 3.3 8.2 4.0 5 23 529 547 526 547 0.95

7 9 5.5e-06 0.00028 21.0 1.7 1 23 553 575 553 575 0.98

8 9 7.2e-05 0.0037 17.5 3.1 1 23 581 603 581 603 0.98

9 9 0.0024 0.12 12.7 5.2 1 23 609 632 609 632 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.3	1.7e+02	2.8	0.4	2	23	354	376	353	376	0.91
2	9	0.00025	0.013	15.8	0.4	1	23	382	405	382	405	0.97
3	9	0.14	7.3	7.1	5.6	1	23	439	461	439	461	0.94
4	9	9.4e-06	0.00048	20.3	0.9	1	23	470	492	470	492	0.98
5	9	1.1e-07	5.4e-06	26.4	0.3	1	23	498	520	498	520	0.99
6	9	0.065	3.3	8.2	4.0	5	23	529	547	526	547	0.95
7	9	5.5e-06	0.00028	21.0	1.7	1	23	553	575	553	575	0.98
8	9	7.2e-05	0.0037	17.5	3.1	1	23	581	603	581	603	0.98
9	9	0.0024	0.12	12.7	5.2	1	23	609	632	609	632	0.95

Sequence Information

Coding Sequence: ATGTCGCTACGAGATGTCAAatcaaaaaatacttttgtgattgtttacaatattgGTTGCCGTAGAATTGAGGCAGCAAAAATAGTGAGTCCTTCGGTTTCCTTGACTTTTTTCAGTAATTTCGGAATCATACAAACTAGACAATACACAAAGACAACCGATTGGACTGCCATGACTGATATTTGCCGGTTATGTGCATCGTTAAAAATATTGGATCAACTAACGTCCATGCAAGAGCCAAACCTTCGAATTGGGGAAAAACTGGCGAGATGTTGTTCCGTTGAACTATCTCCGGATGAATTAATGCCACAGAGTATATGCCATGAGTGCATTGTGTCGATCGACAGTAGCTGGAATTTTGCGGAAAAAGTGTGCCAGGCACAGGACATCTTGAAGAAAGCTTTCATCATTCGAACGGCTCCGATTGATGAACCAGACGAGCCGGGAAATTCATTTAACGGCACAATCAGTCGGCATAAAGTTGCgTCACCAGCATCAGTCAACGACCTCTCGTTGAAAGTGAGGAGCATGATCATATCGCTGCATACGAAAGGTTACGGGACCAGTGAAATCGGGCAGAAATTGAACATCAATATGAATCTGGCGGACCAGTGGATTCGAATGTATGAGGATCAACGAAAGCCCATCAATGCGATAGTCATGAATGAAAGTGGATCGGAAATTGAATTATCGAACGAGAAGACTGATATTTTGATCGGAACGGGCAACGAGGATATTGAAATCCATTCAGAAAATGACACCGATGCCTCCACCATAATTGAAATTGTTGACTATAAACTGGACAGCACTGAGAGACCGGTTGTCGACAGCGTCGCTGAAACAATTTCTTCTGTCGCTGATACTACAGAAACGCAATCCAATTCTGACAATGTTTACGGCGATCATCATGACAATTCCGACGAATCAAACTCGAATTTCGAATACGGTGAGATCCTAGGCGCagtagaattgaacgacgacgATAAAAACGACGACGGATCCATATCGCAACGGGctgtggaaaaattgaaaatcgaatcGTGGAACGACTATCCGTGGAAGTGTATGGACTGTGACCTATTGATGGCGGACATACGCGATCTACGTCAACATCACATCACCAACCACCAATCGACCAGTAAATATAGTTGCGTCGATTGTCCCAAAGTGTTTAACAAATATGCGACGTTTCTGGCTCACGTACGGAACAGGCATCGTTCTCATTTAAAATTTTGCTGTGATATTTGTTCGGTCTTCTTCTGGAACTCGAGATCAATGCACCAACATCGTTACGAGCACGATAAGGATCGTGCGTATCTGTGTCAAACGTGCGGCAAAGGTTTCCGTTGCAACAGTACGCTGCAGGTGCATTGCCGGTCGCATTTACCGGTTGATCTGAAGAATCGATACAATTGCGACATTTGCTTCAAGAAATTCGGCACGAAACCGAATCTACAGGCGCACAAGCGCATCCATAGCGGAGTGAGAGACTTTACTTGCGAACAGTGTGGACGTGGATTCGTGCAGAAAGGCAATTTGGAAAATCATATGCTCACCCACTTTCCGAGCAAACCCTTCAGCTGCCATTGTGGAAAGACATTCAAAACCCAACTGCGCCTGTTGAAGCACAAAACGGTTCACACCGATTTTAAGCCGCATAAATGCCAGGATTGTGGTAAAGAGTTTCGCGAAAAAGGCACGCTTAAAGAACACGAACGAATTCACTTGGGACTGATGCCATTCACGTGCGAGTTTTGTGGCAAAAAATTCCGTTTCAAGGGTGTGCTAACGACTCATCGTCGTCAACATACCGGCGAGCGGCCATACTCCTGCATCGAGTGCAATCATCATTTTACTAACTGGCCGAATTATAACAAGCACATGAAACGGAGACATGGAATAAATACAAGCGTTACAGTTAGAAAGCCTCAATTAATTCCTCCCTCCGGGATTCCTCCAACAAAACTTAATCATGTGGTGCCAACCGTTCACAATACGGCTTATGTACAAGCGACATCCATTCCAACAACAGACAGTCGAAATGGCCACATTGCAAATACGGATATGATGGAAACAATATGCGAAAAGGATATCATTTGCGTTAATCAGAATGGCTTTGCGACCGCAACGGCATCAGAGAATGTCGCGGCAGCAACGGTCCAGGGAGTGAATGTTATCGTCAATCGAAGTGAACGGAAGGccaCATCGAATCAATCGGCACCTCAAATCACAATTTTAACTCAACCGGCCAGAGACAATATCAATCAGCAGTACAGTTATTTACCGAATGGGTCAACAATGTTGGGATTTTATAACATTCATGGTGTGGACTTAATGCAGAATGCGAATGTTCAACAATAA
Protein Sequence: MSLRDVKSKNTFVIVYNIGCRRIEAAKIVSPSVSLTFFSNFGIIQTRQYTKTTDWTAMTDICRLCASLKILDQLTSMQEPNLRIGEKLARCCSVELSPDELMPQSICHECIVSIDSSWNFAEKVCQAQDILKKAFIIRTAPIDEPDEPGNSFNGTISRHKVASPASVNDLSLKVRSMIISLHTKGYGTSEIGQKLNINMNLADQWIRMYEDQRKPINAIVMNESGSEIELSNEKTDILIGTGNEDIEIHSENDTDASTIIEIVDYKLDSTERPVVDSVAETISSVADTTETQSNSDNVYGDHHDNSDESNSNFEYGEILGAVELNDDDKNDDGSISQRAVEKLKIESWNDYPWKCMDCDLLMADIRDLRQHHITNHQSTSKYSCVDCPKVFNKYATFLAHVRNRHRSHLKFCCDICSVFFWNSRSMHQHRYEHDKDRAYLCQTCGKGFRCNSTLQVHCRSHLPVDLKNRYNCDICFKKFGTKPNLQAHKRIHSGVRDFTCEQCGRGFVQKGNLENHMLTHFPSKPFSCHCGKTFKTQLRLLKHKTVHTDFKPHKCQDCGKEFREKGTLKEHERIHLGLMPFTCEFCGKKFRFKGVLTTHRRQHTGERPYSCIECNHHFTNWPNYNKHMKRRHGINTSVTVRKPQLIPPSGIPPTKLNHVVPTVHNTAYVQATSIPTTDSRNGHIANTDMMETICEKDIICVNQNGFATATASENVAAATVQGVNVIVNRSERKATSNQSAPQITILTQPARDNINQQYSYLPNGSTMLGFYNIHGVDLMQNANVQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00245808;
90% Identity: iTF_00245808;
80% Identity: -