Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: -
Assembly: GCA_016920775.1
Location: JAFDOW010000107.1:3448459-3452364[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 9.2e-06 0.00047 20.3 0.3 1 23 161 183 161 183 0.97

2 8 0.0044 0.22 11.9 3.5 1 23 191 214 191 214 0.96

3 8 0.0001 0.0052 17.0 1.3 1 23 221 244 221 244 0.97

4 8 0.0021 0.1 12.9 3.9 2 23 251 272 250 272 0.95

5 8 0.17 8.5 6.9 0.4 2 23 284 305 283 305 0.96

6 8 2.4e-05 0.0012 19.0 0.9 1 23 312 335 312 335 0.94

7 8 2.5e-06 0.00012 22.1 0.1 1 23 341 364 341 364 0.93

8 8 1.5e-05 0.00078 19.6 3.2 1 23 370 393 370 393 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	9.2e-06	0.00047	20.3	0.3	1	23	161	183	161	183	0.97
2	8	0.0044	0.22	11.9	3.5	1	23	191	214	191	214	0.96
3	8	0.0001	0.0052	17.0	1.3	1	23	221	244	221	244	0.97
4	8	0.0021	0.1	12.9	3.9	2	23	251	272	250	272	0.95
5	8	0.17	8.5	6.9	0.4	2	23	284	305	283	305	0.96
6	8	2.4e-05	0.0012	19.0	0.9	1	23	312	335	312	335	0.94
7	8	2.5e-06	0.00012	22.1	0.1	1	23	341	364	341	364	0.93
8	8	1.5e-05	0.00078	19.6	3.2	1	23	370	393	370	393	0.98

Sequence Information

Coding Sequence: ATGGACTTCGAATGTACAAAATACAATATTGAAGAGAGTGTAGACATTTGCACGAATATCAATGAAAAAGAAACCGAAGATACCAACGATTGTGTTCATTCACAAGACGAATCGAATGCTGCCGTTCAACTCGATTCAGATGTCGTGAGCAcaaacgaatccacaataaaccTTAGGCTAAGAGATATAAAGCTTCAAGTCGACCATAAATCTGGTGATGCACCATCGGCGAAAAAAAGTCGTGGCACACGAAAACGGGACCATCCGTCGGTACTAGCTGGTGATGATTTGATTCGAAACTGGTGTCAGATGCAGTGCACTAAATGTACGGAATCATTTGCAAGTTTCACGTTCAAAGACGTCAAAAATCACTACCACAAGGAGCACGACATCAACGGATTTCTCGTATGCTGTcgtaagaaattttttcgacgAATCAGAGCCTTGGAACACATTGCTAGGCACATAAATCCCCGCGAATTCAGCTGTGAAAAgtgcaataaaatcttttccgACAAACCGGCACTACTCAACCATCTGGATAGTCATGTATCGTTGGATAAACGAGCGTACAAGTGCGATATGTGCGAGGACAGTTTCATGCGGAAATATCAACTTTCTCAACATCATAAGGCTCGGCATTTACCCGAAGAGAAAAGATTCGTTTGCGACGAATGTTCGAAAGCgttcaaatcaaaatcCATCCTCCATGCGCATACCCGAAACGTTCACAATAACAAAAACGTCCTGATGTGTGATGTGTGCGCGAAAACTTTTAAAAGTAAGCAGTGCCTACAACAACACTTTTCGAAGCATAAAAGCGAATCGGGCGAAGAAACAACGAAACTTCAGTGCACAATCTGTTCTGCATGGCTGAAACACCCGAATAGCTTACGCGGTCATATGGCACGGCATTTAGAAGCACAAACGGAGCACAAATGTGAAGAGTGCGGAAAGAACTATCCCACTAGTGGTGCGTTACGAAGCCATCGGACGTATGTTCACAACAATACAAAACTGTTTCCCTGTACAGTATGTCCGAAAACGTTCAAACGGTCCGTGACACTGAAAGAACACATAGCCGGTGCTCACACCGGAGAAGTGTTGTATCAATGTCCGTTTTGCACGAAAACGTTCAACTCGAGTGCAAATTTCTACGCACACAAGAAGCGAAAACATCGGAAAAACGGAGAGTTTGCGGCGTAG
Protein Sequence: MDFECTKYNIEESVDICTNINEKETEDTNDCVHSQDESNAAVQLDSDVVSTNESTINLRLRDIKLQVDHKSGDAPSAKKSRGTRKRDHPSVLAGDDLIRNWCQMQCTKCTESFASFTFKDVKNHYHKEHDINGFLVCCRKKFFRRIRALEHIARHINPREFSCEKCNKIFSDKPALLNHLDSHVSLDKRAYKCDMCEDSFMRKYQLSQHHKARHLPEEKRFVCDECSKAFKSKSILHAHTRNVHNNKNVLMCDVCAKTFKSKQCLQQHFSKHKSESGEETTKLQCTICSAWLKHPNSLRGHMARHLEAQTEHKCEECGKNYPTSGALRSHRTYVHNNTKLFPCTVCPKTFKRSVTLKEHIAGAHTGEVLYQCPFCTKTFNSSANFYAHKKRKHRKNGEFAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00245809;
90% Identity: iTF_00245809;
80% Identity: -