Bodo007251.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000940.1:1507240-1510754[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0062 0.31 11.4 0.2 1 23 176 198 176 198 0.97 2 12 0.00047 0.024 14.9 0.9 1 23 203 226 203 226 0.93 3 12 0.00072 0.037 14.4 0.8 1 23 353 376 353 376 0.96 4 12 2.8 1.4e+02 3.1 0.2 2 23 396 419 395 419 0.85 5 12 2.4e-06 0.00012 22.2 4.5 1 23 451 473 451 473 0.98 6 12 0.00047 0.024 14.9 0.6 1 23 481 503 481 503 0.97 7 12 0.15 7.5 7.1 0.3 1 11 511 521 511 534 0.82 8 12 0.00011 0.0056 16.9 0.2 3 23 545 566 543 566 0.96 9 12 3.5e-06 0.00018 21.6 0.6 1 23 582 605 582 605 0.98 10 12 1.1 58 4.3 0.2 2 23 611 633 611 633 0.93 11 12 2e-05 0.001 19.3 0.7 1 23 638 660 638 660 0.98 12 12 0.031 1.6 9.2 0.4 1 23 666 689 666 689 0.97
Sequence Information
- Coding Sequence
- ATGAATCGTAAAAACATGGAATTGTGCCGACTGTGTCTTCTGCATCAAAGTCGACACATCAACATTTTCAACAGCAATGAACCGTTCGAAAATGTTGCCGACCTGATAGCTCAACACATTGGTGagGTCAGCCAATTGGATCCACTACCAAAGTACGTGTGCATCGACTGCTGgacaaaaatcaagaattttcacacatttcaCCGAGATGTACATGCAGCGCAGACAAAATATTTAAGTGAATTGGTGAAACAGGAACAGGACAACAATTTCGTGGAGATTCAGGAACACTCGGATCAGGATCAAGACAGTGATTTCATGTGCAGTTCCGATAATTTTGAACCTTTTTACAATCCGACGAAAATCGAACGTGTGGAAATTGATGTCAAACCGAGCGATATTATTGCCAGCGATGAACCGTTAAATGAGAACGTAAGAAAAACCAGAAATGCTGCGAGGTCAGCGCTTGAAAATATTCGCTCGATATCTTCAGATCTTACACTCTCTGAAAGGCATCCGAATAAGTTCATCTGTGACGTGTGTCAAGCGGTAATTTCGTCGAAGCAAAAACTGAAGGACCACTTACTGCGTCACGTTAATGCATCTTACGTTTGCCAAATTTGCTCTCAAAGATTCACGAACAAAAAAGCTGTCCAAAAACACAACAAAGCCGAACATAGCCAAGaAATGTTGTCAAAACTGAAAGATCAACAAGAGCGATTCGAAAAGTTGTCCACATCGTTGACCGGAGAAGAACTGAAACAGATTTTAACGCAAAGCGTTGACTCGCACTGCGATATTTGTAACAAAGACCAACAGACAATATCGTTACAACAGATGAAAGACCACTACAAACAACAACACGATATGGATGATGGTCATATTAAGTGCTGTGGCGTAAAAATGACAACTGATGTCGAAGTGAACGGTCACGTTTACCGGCATTTACATTCCGATCAACTCAGATGTGAAGCATGCGGAAAGATTATCAGTGACAGCGTTGAAAAAATGCTTTCGCATCTTCAGCGACACATCGACGAACTGGAAAAGAATCCGTTCAAATGCAAAGACTGCAACAAAGGTTTCGCTCAAGAAGTCTTTATGGTTCTTCATCGACGATATGTGCATGGAATCGCCGATGGAAGCGAAGTGAAAGCAGCAATGTTGACGGATGTCTTCACCATGAAATGTGATTTGTGCGCAAATGTGTCCTTCACATCACTGCCGAATGCCAAGACCCATTACATGACCGAACATGGCATCAAGGGCTATCTGTTGTGCTGCGATTCGAAATTTATGTCCGCCACATCCATTGAGGATCATTTCAAATATCATTTGGATCCCAGTCATTTCAAATGCACATACTGTGGCAAGTGTTTCGATCGGAAAATTACGTTGTCGGTGCATATGTCCAAGCACAAAGCGGTCGAGAGCAAGAAATTCGTGTGCCAAGTTTGCGGCAAAGCATTCCTCTCGAACTACAAACTGAAGGATCACTTCAATGTTCATGATAAGGCCAATAGGAAATCATTCCAATGCACACAATGCGACAAACGCTACTCAGCCATCCAATCGCTGGACTTTCATGTCAAACTCATTCACAACAAAGACGGCAACATGAAACGAGTCATTTGTGAATACTGTGGCCGCGATTTCGTATCGAGATCGGCGGTGAACAGTCACATTCACACGGTCCATCAAATTGTGACAACGGCCAACGGATCGCGTAGTCTTACCGAACGGTATGAGTGCACCGTATGTGATGCATCGTTTATAAATAAATACCGTTTGAAGAAGCACATGGACACCATTCACATGGGAACGCCGGAAAAATGTACGATTTGCAGTAAAATTGCGCCGAATGCAGCGGCAATGGCTTGTCACATGCGAAACGTTCACGTGGAAAGCAGTCACAAATGCAATTTGTGTAATAAATCGTTCAAGGCGGCCGTTGCGTTGAAGGATCACATAGCAACCCATACCGGCGAGAAATTGTATAAATGTTCGTTCTGTCCGGAAGCATTCATTTGGAGACCGAACATGTATTCACATCAGAAGAAAGCCCATCCAAAGGAGTGGAAGAAGAGCCAAAAGAAATCGATTGCCAACGATTCGACTTGA
- Protein Sequence
- MNRKNMELCRLCLLHQSRHINIFNSNEPFENVADLIAQHIGEVSQLDPLPKYVCIDCWTKIKNFHTFHRDVHAAQTKYLSELVKQEQDNNFVEIQEHSDQDQDSDFMCSSDNFEPFYNPTKIERVEIDVKPSDIIASDEPLNENVRKTRNAARSALENIRSISSDLTLSERHPNKFICDVCQAVISSKQKLKDHLLRHVNASYVCQICSQRFTNKKAVQKHNKAEHSQEMLSKLKDQQERFEKLSTSLTGEELKQILTQSVDSHCDICNKDQQTISLQQMKDHYKQQHDMDDGHIKCCGVKMTTDVEVNGHVYRHLHSDQLRCEACGKIISDSVEKMLSHLQRHIDELEKNPFKCKDCNKGFAQEVFMVLHRRYVHGIADGSEVKAAMLTDVFTMKCDLCANVSFTSLPNAKTHYMTEHGIKGYLLCCDSKFMSATSIEDHFKYHLDPSHFKCTYCGKCFDRKITLSVHMSKHKAVESKKFVCQVCGKAFLSNYKLKDHFNVHDKANRKSFQCTQCDKRYSAIQSLDFHVKLIHNKDGNMKRVICEYCGRDFVSRSAVNSHIHTVHQIVTTANGSRSLTERYECTVCDASFINKYRLKKHMDTIHMGTPEKCTICSKIAPNAAAMACHMRNVHVESSHKCNLCNKSFKAAVALKDHIATHTGEKLYKCSFCPEAFIWRPNMYSHQKKAHPKEWKKSQKKSIANDST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245789;
- 90% Identity
- iTF_00245789;
- 80% Identity
- -