Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: -
Assembly: GCA_016920775.1
Location: JAFDOW010000806.1:875884-878625[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.77 39 4.8 1.2 2 23 37 58 36 58 0.92

2 12 0.00058 0.029 14.7 2.9 1 23 166 188 166 188 0.99

3 12 0.00046 0.023 15.0 0.7 2 23 198 220 198 220 0.96

4 12 0.73 37 4.9 1.9 1 23 250 273 250 273 0.96

5 12 0.0022 0.11 12.8 0.2 2 23 280 301 279 301 0.96

6 12 0.35 18 5.9 3.3 1 23 336 359 336 359 0.96

7 12 0.00082 0.042 14.2 1.2 1 23 374 396 374 396 0.97

8 12 0.0076 0.38 11.1 4.4 1 23 402 424 402 424 0.97

9 12 7e-08 3.5e-06 27.0 2.4 1 23 430 452 430 452 0.99

10 12 3e-06 0.00015 21.9 0.4 1 23 457 479 457 479 0.98

11 12 7.1e-07 3.6e-05 23.8 1.7 1 23 485 507 485 507 0.98

12 12 1.2 63 4.2 8.4 1 23 512 535 512 535 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.77	39	4.8	1.2	2	23	37	58	36	58	0.92
2	12	0.00058	0.029	14.7	2.9	1	23	166	188	166	188	0.99
3	12	0.00046	0.023	15.0	0.7	2	23	198	220	198	220	0.96
4	12	0.73	37	4.9	1.9	1	23	250	273	250	273	0.96
5	12	0.0022	0.11	12.8	0.2	2	23	280	301	279	301	0.96
6	12	0.35	18	5.9	3.3	1	23	336	359	336	359	0.96
7	12	0.00082	0.042	14.2	1.2	1	23	374	396	374	396	0.97
8	12	0.0076	0.38	11.1	4.4	1	23	402	424	402	424	0.97
9	12	7e-08	3.5e-06	27.0	2.4	1	23	430	452	430	452	0.99
10	12	3e-06	0.00015	21.9	0.4	1	23	457	479	457	479	0.98
11	12	7.1e-07	3.6e-05	23.8	1.7	1	23	485	507	485	507	0.98
12	12	1.2	63	4.2	8.4	1	23	512	535	512	535	0.96

Sequence Information

Coding Sequence: ATGGACGCCGTGGACGTTAAAGTGTTCGACACGTTGGGGAAGCAAGGAATCAATGGACTCACCAAATCTGCTGTCATTTATCGTGACGACTCGGCTCGTTTCATTTTAGTTTGCTTCCACTGTGGCAACATGTTCAATGAATGTAATGCAGCTCTTCTGCACATCGAATCTCATTTTCAATTGGCCAACGTTATGGTCAATCAAACGTCGACGATAGATAGTCAATTTACCGTGGATGGCAGCGATATGAATGACAAACTGGCTATGTCGCCAATCCGAGACAATTTTGCCATTAAGACTGAAGCTCCTGATGAGTACAGTGACATTCCTCTCACGATTACGGCTGTGCCAATAATTCAAACGGTGTTTTGTGAAGATGATGAAGTGAAGCCGATGCCAAAGGAGCGGAAAGACACCAAGGAGAGAAAGCCGAGAAAAGTGAAAGATTCGTCGGTAGTGAAAAGTAGTCGAAAAAGGGCACCAATGAAAAATCCCTATCGATGTCACGTCTGCTCTAAAATTTGTAGAGATGCTCCGACGCTTCGTGGTCACTTGAACCGACACAGGAACGCAGAACTGTTACGGATAAACAGATGCAAGAAATGTGACGAGTACTTTAAAAGTGCGCCCACACTACGAAGTCACGTTCTTAAAGTTCATCTGACGAGACAGACAACCGACGGAATTCAATACCGTAACTGCGACTTCGTTCGGTATGAGGAGAAAGAATCGTTTACAGTAGAGCAGCACTCATGTGAATTTTGCACGGACAAATTTTACATCAAAGCCAATTTGGATCTGCATGTAAAAACATCTCATTCCAGTGAGCGACGACTGCAATGTTCGACGTGCAATGCGGTTTTTACAGCGCCCAAGAACTACTACGCTCATCAGTTGGAGCATAAACGAGCTGGATCGAATACTAACGAATTCGATGAGAAGACAGCACAAGCCAGGCTTGAAACTCTCGTTGAAGAACGCATTGATTACGAAGAGGGTCAGCTGTTCCACTGTCGAGCGTGTGACTTCACTTCGGAAACAAAAACCGACATTCGATCGCACATTCGCAAGAAGCATGTCTATCCGATGTTTCCGCCTCCATTGGAAAAGAGGAGACAATACATTTGCGATTATTGCGGTATGCAGCTTAAGTCCAAACACGCCTTGCTCAAACACTTTCTGATCCACACCAATACGAAGACGCATCAGTGCAGATTTTGTGGTAAATTTTTTCGACTTAAGTCGGCGACCAAAATTCATGAGAGACAGCACACAGGGGAGAAGCCGTACCAATGTCACGAATGTGGGAAGGCTTTCATTTCCAAAGGCTCACTGACTACACATAGAAAGACCCATGAGGAGACCACATATCCGTGTGAAATTTGCGGGAAGGTGTTCAGACTGTCGGTTCATCTTGGGAATCATGTCAAAACGCATCGAGTGGAGCGAGATTTCAAGTGCACAATTTGTTCGAAAACATTCAACACTCGGATTTATTTGATGCGACACATGGAAATACACTCGGAACGGAAGCATAAATGCCACTTCTGCGATAGTACATTTAATACGGGAGACGGTAGGAGACAACACCAACGACATAAACATAAATATGAAATGGGTTTGCCAATGTAG
Protein Sequence: MDAVDVKVFDTLGKQGINGLTKSAVIYRDDSARFILVCFHCGNMFNECNAALLHIESHFQLANVMVNQTSTIDSQFTVDGSDMNDKLAMSPIRDNFAIKTEAPDEYSDIPLTITAVPIIQTVFCEDDEVKPMPKERKDTKERKPRKVKDSSVVKSSRKRAPMKNPYRCHVCSKICRDAPTLRGHLNRHRNAELLRINRCKKCDEYFKSAPTLRSHVLKVHLTRQTTDGIQYRNCDFVRYEEKESFTVEQHSCEFCTDKFYIKANLDLHVKTSHSSERRLQCSTCNAVFTAPKNYYAHQLEHKRAGSNTNEFDEKTAQARLETLVEERIDYEEGQLFHCRACDFTSETKTDIRSHIRKKHVYPMFPPPLEKRRQYICDYCGMQLKSKHALLKHFLIHTNTKTHQCRFCGKFFRLKSATKIHERQHTGEKPYQCHECGKAFISKGSLTTHRKTHEETTYPCEICGKVFRLSVHLGNHVKTHRVERDFKCTICSKTFNTRIYLMRHMEIHSERKHKCHFCDSTFNTGDGRRQHQRHKHKYEMGLPM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -