Bodo009558.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000474.1:1901124-1904112[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.7e-06 0.00019 21.6 0.5 1 23 140 162 140 162 0.97 2 11 0.011 0.55 10.6 0.5 3 23 173 194 172 195 0.92 3 11 0.0007 0.035 14.4 1.1 2 23 213 234 212 234 0.94 4 11 0.0016 0.08 13.3 3.3 1 23 241 263 241 263 0.98 5 11 0.28 14 6.2 0.6 3 23 278 301 277 301 0.91 6 11 6.5e-06 0.00033 20.8 1.2 2 23 308 330 307 330 0.97 7 11 0.0011 0.055 13.8 1.5 1 23 334 356 334 356 0.94 8 11 0.014 0.73 10.3 2.5 1 22 385 406 385 408 0.90 9 11 0.00027 0.013 15.7 0.2 1 23 414 437 414 437 0.93 10 11 0.001 0.051 13.9 1.5 1 23 441 463 441 463 0.98 11 11 0.00038 0.019 15.2 5.5 1 23 465 488 465 488 0.97
Sequence Information
- Coding Sequence
- ATGGAAGAATACGATCCGGAATTCTTAACGTTCACCATAAAAGATGAACCCGAGGATAGTGAAGATGATTTCATTGGCTTCGAAGACAACAGCTCCTCATACGTCGATATGTACAAGCAGTACATTCTGGTGGATAGTATCAAAGATGAGTTTCAGCAAATGACCACTAAACCACTACAGGCCCCGAAGCAGACGATTCGAAAAGTGCCGCAACCGAAAGTAACGAAAAGGCCAGCGGTAGTGAAAAGAATTCCGAAGCCCGCCGTTGCTAATATAAAAGTTGAACTTCCCAAAGATGATCCATTAGAAATAGGGCAACAGGAGGAGAATTTAAAATCGGGTGGCAATAAAACGCGAACCGATATTGAAATCACTGTGATGGGAAGTCTTACCGATAGTGGCATCAAAACATCCGTCTACATTTGCGATATCTGCGGAGCTAAATATaccagaaaatcgaaattgcgCACACATATTCTAAATCACGTGGTCAGAGGACCGAATGAGTTACCACTATGTGAATACTGCGGCGAAGTGTTTGATTCGGTTGATAGTTTCTTCTCACATTTCGAAAATGTGCACCACGCCAATCACGATGATGTGCTAATCACTTTTGATCAGGTGAAGCATGTGTTGTGTTGCGAATACTGCGGAAATGCTTACGCTCATCCAGAAAGTTTGAACAAACATCGTGTTGTTCATGCCGGTAAACCGAAGCCCTACCAGTGTCAATTTTGTGACACTCACTTTGACCAGTACAGTAAACTGGTTACGCATGCCTTAAAGCACAACGACATCAAAACTGATTTCCCAGTCGATCGTTATTGGCTGTGCGATTACGAAGGATGCACGAAATCGTTGAAAAACATCACTTCATTGAACTATCACAAAAAGAATGTGCATCAGAAGAAGTACATGTCACAGTGTAAAGAGTGCGGTCAAGTATTTGAAAATAGTTGGTCACTGCACAATCATATGCAGGTGAAACATCTTGGTCCGTTCCCGTGCATCATTTGTGATCGAAATTGTCCTACGACCAAACTACTGAAACGTCATATGCTGACCCACACCAAAGTTGAATCGGACCAGCCAAATCAGTCGCGCAGATTCGTcaattattgtaaatatttgcaaATAGATCCGAACGGAACATTTACGTGCAAGGAAtgtaagcaaaattttgacacaaGAAAGAGATTCCGGACGCATGTTGTCGAATCTCACGACAAGAGCAAAAATTTCTTCTGCCCACAATGCGATAAAGGATTCACATTGGCATGGCAATTGAACTCACATGTTGAGAACACGCATGTCAAAAAATTCCAATGTACCATTTGTGGAGTGTTCAAAAACAAGCAATCGAAATTGCAGCAACACATGAAAATCCATCAATTCCCTTGTCACTGTTGTGACAAATCTTTTTCTCGGCAAATTTATTTGGAGAGTCACATCAAAAAGAGGCACATCAGCAAACTTATATGCGGCAACTTCGAGCAAAAAGTTTTGAATAAATGCGAGTACGTTGACAGTAACGGCGTTCGCAGGCCACAACCAACTAAAATTTATGTAATGCCTGGCCCATGTCCAGAAGGTTCCATTGCATCACAAACTCCGATTAGAACTATCAACGTAAACATTAGCCAGGAACAATGTTTTGTCGAGCCAAAGATACGCAGACGGCAGGATACTTCGGGCGCTTCCGAACAGTACTCGTATGAAAACGTGAACGATCAACATAATTTGGAGAATTTGGCTGCAATTGCTTTCCTCGAATCAGAAATGTCGCAGGCCGCGAAGCTGTTAACCATGCCATTCATTAATAAATGA
- Protein Sequence
- MEEYDPEFLTFTIKDEPEDSEDDFIGFEDNSSSYVDMYKQYILVDSIKDEFQQMTTKPLQAPKQTIRKVPQPKVTKRPAVVKRIPKPAVANIKVELPKDDPLEIGQQEENLKSGGNKTRTDIEITVMGSLTDSGIKTSVYICDICGAKYTRKSKLRTHILNHVVRGPNELPLCEYCGEVFDSVDSFFSHFENVHHANHDDVLITFDQVKHVLCCEYCGNAYAHPESLNKHRVVHAGKPKPYQCQFCDTHFDQYSKLVTHALKHNDIKTDFPVDRYWLCDYEGCTKSLKNITSLNYHKKNVHQKKYMSQCKECGQVFENSWSLHNHMQVKHLGPFPCIICDRNCPTTKLLKRHMLTHTKVESDQPNQSRRFVNYCKYLQIDPNGTFTCKECKQNFDTRKRFRTHVVESHDKSKNFFCPQCDKGFTLAWQLNSHVENTHVKKFQCTICGVFKNKQSKLQQHMKIHQFPCHCCDKSFSRQIYLESHIKKRHISKLICGNFEQKVLNKCEYVDSNGVRRPQPTKIYVMPGPCPEGSIASQTPIRTINVNISQEQCFVEPKIRRRQDTSGASEQYSYENVNDQHNLENLAAIAFLESEMSQAAKLLTMPFINK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245732;
- 90% Identity
- iTF_00245732;
- 80% Identity
- -