Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: L
Assembly: GCA_016920775.1
Location: JAFDOW010000240.1:577874-597094[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00025 0.013 15.8 3.4 1 23 102 124 102 124 0.97

2 18 0.2 10 6.6 6.7 1 23 130 152 130 152 0.98

3 18 2.5e-07 1.3e-05 25.2 3.1 1 23 158 180 158 180 0.99

4 18 1.2e-05 0.00059 20.0 0.3 1 23 186 208 186 208 0.98

5 18 0.09 4.6 7.8 1.6 2 23 309 331 308 331 0.96

6 18 0.11 5.6 7.5 0.4 1 23 435 457 435 457 0.95

7 18 0.00033 0.017 15.4 1.1 1 23 465 487 465 487 0.98

8 18 0.017 0.85 10.1 3.2 1 23 495 519 495 519 0.91

9 18 5.5 2.8e+02 2.1 0.1 1 23 524 547 524 547 0.87

10 18 0.054 2.7 8.5 2.1 1 23 554 577 554 577 0.98

11 18 0.002 0.1 13.0 1.9 1 23 609 631 609 632 0.96

12 18 3.9 2e+02 2.6 0.6 3 23 788 810 788 810 0.86

13 18 0.00036 0.018 15.3 1.7 2 23 819 841 818 841 0.96

14 18 0.0034 0.17 12.2 0.1 1 23 847 869 847 869 0.98

15 18 5.3 2.7e+02 2.2 0.2 2 23 877 898 877 898 0.94

16 18 0.022 1.1 9.7 0.1 1 23 984 1006 984 1006 0.97

17 18 0.0011 0.054 13.8 0.1 1 23 1016 1038 1016 1038 0.97

18 18 0.0039 0.2 12.1 0.9 1 23 1045 1067 1045 1067 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00025	0.013	15.8	3.4	1	23	102	124	102	124	0.97
2	18	0.2	10	6.6	6.7	1	23	130	152	130	152	0.98
3	18	2.5e-07	1.3e-05	25.2	3.1	1	23	158	180	158	180	0.99
4	18	1.2e-05	0.00059	20.0	0.3	1	23	186	208	186	208	0.98
5	18	0.09	4.6	7.8	1.6	2	23	309	331	308	331	0.96
6	18	0.11	5.6	7.5	0.4	1	23	435	457	435	457	0.95
7	18	0.00033	0.017	15.4	1.1	1	23	465	487	465	487	0.98
8	18	0.017	0.85	10.1	3.2	1	23	495	519	495	519	0.91
9	18	5.5	2.8e+02	2.1	0.1	1	23	524	547	524	547	0.87
10	18	0.054	2.7	8.5	2.1	1	23	554	577	554	577	0.98
11	18	0.002	0.1	13.0	1.9	1	23	609	631	609	632	0.96
12	18	3.9	2e+02	2.6	0.6	3	23	788	810	788	810	0.86
13	18	0.00036	0.018	15.3	1.7	2	23	819	841	818	841	0.96
14	18	0.0034	0.17	12.2	0.1	1	23	847	869	847	869	0.98
15	18	5.3	2.7e+02	2.2	0.2	2	23	877	898	877	898	0.94
16	18	0.022	1.1	9.7	0.1	1	23	984	1006	984	1006	0.97
17	18	0.0011	0.054	13.8	0.1	1	23	1016	1038	1016	1038	0.97
18	18	0.0039	0.2	12.1	0.9	1	23	1045	1067	1045	1067	0.96

Sequence Information

Coding Sequence: ATGGCTCTGAAAATGTTTTATCGTGGTCCCAGTTCGAGACTTGaaactttaattgaaaaaattcaacaaactaAAGAAGACATATATTCGTCGCACACATCATCCAGCTTTTCACCGTCGCCATCGACAGAAGGAGCCGAAACACCAAATTCCTTAATTCATGACGCTGAAAATAATCGGCTTACAGCGAATATTGAAGAAAATGGTAATGAACGTGCCATGAAGAAGtcaaagttaaatgaaaattgtctgAAAAGTGATAAAACCACTCTGGATGGGGCACAGCAAAATGGTGAAGGAACTTATCACTGTCAATTTTGTGAGAAATCATTTCCAAGATTGGGCTACCTTAAAAAGCACGAACAAAGTCATGCAGAACACATGCCATTTAAATGCGAATATTGTTCACGTCTGTTCAAACATAAAAGGTCAAGAGATCGACATACGAAATTACATACCGGCGATAGAAGATATCGTTGTCCACATTGTGAAGCCGCATTCTCCAGAAGTGATCACTTAAAGATTCATATGAAAACGCACGACAATCAGAAACCATTTCAATGTACAATCTGCAACAGAGGATATAACACCGCAGCCGCTCTAACGTCACACATGCAAAACCATAAAAAACAGGCCGCGTTAGTCGGAGCAACCGGAATGAATTATAGTCCTAGATCGACGGGCTCTGGCTCCAGTACAAGCAGTATCCATCAGAAGCGCAAATACTCCCCAATCGATCCGAATTCGAACACCGATTATATCAGTGCCAAGCGGTCAGCCAGTGCCAATTCAACGCTATATTGTGTGTATTGTACGAAGAATGATTTTCAATCGTTGGATCAATTGCATTCGCATATACAAGCGATGCATGCAGCGGCACTGAGAGAGAATCACTCACCGTTCTCTAGTTCGAGCCTACAGTTGTCGTGTGAATTTTGCACCATGAAATTTCCCACTGTTCCTTCTATGTTTCATCATGTTCGCACGACGCATATTGATCGAGTGAACAGTCCCAATACATATATTGACCACTTTAACCGCATGACCGGATACGGAAAGTTTGTACCTTCAGTGGTGGAGCGTAAAGATGACGAGAAGAACAATCATCACACAATTAAAACTGAACAGCCTAGCCCCAGAGATGAAAAAGAGAGGGAAAAATCAGCCACTCCGATTGCCGTCGCAGCAATAAAACAAGAAGAAGAGCAGGATAGTCCAACCGATTTAAGTAAGAAACCAGTCAAAGAAAATGACATCAAGAGCAGCCCAGAGGTTGGAACGAAATCTCCACCAGCGGGAAACTTTTTGTGCAACCAATGTAACGCCGCCTTGCCGGATTTTGAATCTTTCCGGAACCAcctgaaaaatcatttgaatcaAGGCATCGGAAGGTTTGTCTGTCAGCATTGTGGCATCAATTTGACCAATCAATCCGACTATGATcgccatatttcatcgcatttttTGATCACCACATCGGAGTTCTTCTGCAATTTTAACTGTAACAAAGCATTCCAGAAATCGGATGATCTGCACAAACATTTGTTCGAAATCCATGCTCAAAGCTTATTCAAATGTGGAATCTGTTCGGATCTATTTGACACAAAGGTGGCCATTCAGGTGCATTTTGCCGTTGCTCATTCCAATGAAGTGAAAATCTATCGGTGTTCCGCTTGCATGGAAGTCTTCAAGACTGAACCGGAGTTCAAGCATCATGTTAAAACCAGACACGTTGTATCTGGTGCCGTTCAATGTGTATTCTGTCGAACAGTTTGCGCTTCAGAACTAGAGATGCACTTCCATTTAGCTGCCCATGCTAGACAATTCAGATGTCCTGCTTGTCCTGAATCCTTTCACGTTGAATTTTTGCTCGATCGTCACATGCAAACGCATCATTCGCAAAAGGATCAATCTTTTCACTATAAAGTTGGTGGTAGTGTGGCCACggcgaacaacaacaacaacatcctGGACTATCACTATGCTAATGTTGGTGCTGCGAACAAGAATCATTACGGATTCAATGCCAAGTTCTACAACAGTCTTCACGTAGACACTCCAAACAACAAACCACCAAGTTCAATGTACGGTTTCTACGACTCGGCTGGCAAATCACGATATGAGAATGGTGGAGTTCCAGTCAAAAATCTTCTCGGCATTTATAACGCCGAACTAGCTTCTAAAATGTATCTGCCTGAAAGCGTTCCTGAACGGGATGTTTACCAACCGACGACTGGGAAATCCTCATATTTTCCGAGAATTTCGTCTAGCAAGGCTCCCGATGTCCTGAAATTGCAAAATTATCCACCGAACCCAGAATTGGACGGGAAATCGCGGGCAACAAGCGAAAGCCAGTTGGGATGTGGGATCTGTGAAAAGTCAGATTTCAATACGGAAGCCGAATTGCATACACACCGGAAAGTTGCTCATAATTTGAAAACTGGAGTCAGTCTACGCTGCGCATATTGCAATGGCAACTTCAGATCCAGACATGAACTCGAAAATCATATGAAGGTTACTCACAACACAACGGGAAAGCATAAGTGTTTGATTTGTGACGAAATATTCCCATCGCCTGCCGTACTAGCTGAACACAAATTGACCCATTCGAAGGTTGGTCCATCCGGAACATGTTCTCGGTGTCTGACCGCTTTGCCAGATGTAACTGCCTTTAAATCACACATGAGCGAACACGGACCCACAGATATCCCAGTCCAATGTATATGTTGCCGTCAAACATTAAACTCTGAATTCGAGATTGGACTGCACGCCAAATTCCACACAAAATCGTCGGACAACCAGGAAAATACGTGTGCTCTCTGTTTAGATCAACTACCATCCAATACCGATGCCAAAGTGtgcgaaaaatgttttaagcGACACAATTTTAGtagtaaatttcaaaattaccaAAAACTGCCTGACCAGCACCATTCCCGCGACATCGAGTATCGATGCAATATCTGCAAGACATACGTCATATCCGCTGTGAAGTTACAAGAGCATTTAATCGAGCATTCATTCAAAGGATGCGAAGAGCGCGGCTATTCGTGCTACATATGTTCGTCCGTTTTTACCGTTCCATCCGGTCTGCAACTGCATATGGCTGAACATGGTAACGGAGCCAAACCGTACGATTGCAATTTGTGTACGGAGAAATTCTTTTTCCGGGCCGAATTGGAAAATCATATGTTTGAGCATGACAACGGCCGCATCAAGGTCAATGCGGAGGAATTGAGTAAAGAACTGAAATCGGAAGAGACCGACGAACGTATGCTAGTAATGAAATCGGAAGCAAATGATGAGGATGAGGAGTACATTGAAGTTGAAAAGGTGCTGGAAACGTCGATGAATTCGTCAAGTCCATCAGCGCCGACAAATACTGTTGAGGATAAATGTGACGAAAACTAA
Protein Sequence: MALKMFYRGPSSRLETLIEKIQQTKEDIYSSHTSSSFSPSPSTEGAETPNSLIHDAENNRLTANIEENGNERAMKKSKLNENCLKSDKTTLDGAQQNGEGTYHCQFCEKSFPRLGYLKKHEQSHAEHMPFKCEYCSRLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALVGATGMNYSPRSTGSGSSTSSIHQKRKYSPIDPNSNTDYISAKRSASANSTLYCVYCTKNDFQSLDQLHSHIQAMHAAALRENHSPFSSSSLQLSCEFCTMKFPTVPSMFHHVRTTHIDRVNSPNTYIDHFNRMTGYGKFVPSVVERKDDEKNNHHTIKTEQPSPRDEKEREKSATPIAVAAIKQEEEQDSPTDLSKKPVKENDIKSSPEVGTKSPPAGNFLCNQCNAALPDFESFRNHLKNHLNQGIGRFVCQHCGINLTNQSDYDRHISSHFLITTSEFFCNFNCNKAFQKSDDLHKHLFEIHAQSLFKCGICSDLFDTKVAIQVHFAVAHSNEVKIYRCSACMEVFKTEPEFKHHVKTRHVVSGAVQCVFCRTVCASELEMHFHLAAHARQFRCPACPESFHVEFLLDRHMQTHHSQKDQSFHYKVGGSVATANNNNNILDYHYANVGAANKNHYGFNAKFYNSLHVDTPNNKPPSSMYGFYDSAGKSRYENGGVPVKNLLGIYNAELASKMYLPESVPERDVYQPTTGKSSYFPRISSSKAPDVLKLQNYPPNPELDGKSRATSESQLGCGICEKSDFNTEAELHTHRKVAHNLKTGVSLRCAYCNGNFRSRHELENHMKVTHNTTGKHKCLICDEIFPSPAVLAEHKLTHSKVGPSGTCSRCLTALPDVTAFKSHMSEHGPTDIPVQCICCRQTLNSEFEIGLHAKFHTKSSDNQENTCALCLDQLPSNTDAKVCEKCFKRHNFSSKFQNYQKLPDQHHSRDIEYRCNICKTYVISAVKLQEHLIEHSFKGCEERGYSCYICSSVFTVPSGLQLHMAEHGNGAKPYDCNLCTEKFFFRAELENHMFEHDNGRIKVNAEELSKELKSEETDERMLVMKSEANDEDEEYIEVEKVLETSMNSSSPSAPTNTVEDKCDEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01266350;
90% Identity: iTF_00245739;
80% Identity: -