Bodo002150.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000935.1:4079650-4086997[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.7 1.9e+02 2.7 2.0 2 23 183 206 183 206 0.90 2 17 8.6e-05 0.0044 17.3 0.5 1 23 212 235 212 235 0.96 3 17 1.8e-06 9.3e-05 22.5 0.4 1 23 270 294 270 294 0.91 4 17 0.23 12 6.5 0.4 1 23 345 367 345 367 0.95 5 17 0.0004 0.02 15.2 5.0 1 21 374 394 374 397 0.95 6 17 0.00019 0.0096 16.2 0.4 1 23 403 426 403 426 0.95 7 17 0.00084 0.043 14.1 3.4 2 23 433 455 432 455 0.94 8 17 0.17 8.4 6.9 0.7 1 23 462 485 462 485 0.90 9 17 6.1 3.1e+02 2.0 1.3 2 23 492 515 492 515 0.85 10 17 5.5e-05 0.0028 17.9 0.5 1 23 521 544 521 544 0.96 11 17 9.4 4.8e+02 1.4 1.9 1 23 551 573 551 573 0.92 12 17 1.3e-05 0.00067 19.8 0.6 1 23 579 603 579 603 0.93 13 17 0.08 4 7.9 1.0 1 23 654 676 654 676 0.96 14 17 0.00075 0.038 14.3 5.3 1 23 683 706 683 706 0.96 15 17 6.7e-05 0.0034 17.6 0.3 1 23 712 735 712 735 0.96 16 17 6.7e-05 0.0034 17.6 1.1 2 23 742 764 742 764 0.97 17 17 0.042 2.1 8.8 2.4 1 23 770 793 770 793 0.95
Sequence Information
- Coding Sequence
- ATGGGTTACAACGATTTTTTGGATCTGATTACAAGAAACACCAGTAATAAACTTGAAGATTATAAAGAACTGTGTCGCATTTGTCTAGAAAATCAACCAAATAGTGTTGACATTAGCGACAACAGCTATGTAAATCGAAGCGAAGAAATCCGGAGCAACTACACAGCCATCACTAAACAATATTTGCCAACATCGGATGAATACCCGAAATTTGTGTGTCGGTCTTGCGAGATAAATTTGAGTCAATTGGCGCGATTCGCTCAACAAATCGAAGAAAATGCCGAGAATTGGGAAATATTTCTATCCCGGAGACGAATGGAAGAGTGTGCGGACATAGTCGATACAATCAAAATCGAATTCTGTGAGGAAGAATGCGACAATGGCCCGGCTACCGACACACACATTTACGATGCATTGGAAGTAGCGGAATTGCCTCCAATTAAAATTGAGGAAATATTCGCCGCACCCTTGCCAGCAATCGACAAGCCAAGGAAAAAATACAAGAGGAAACCGAAACCGTCATTTGTGACCACTGAATTCGAGCGGACCTGTCAACATTGTGATGAACCAACGTTTAAGTCGTTGACACGATTGTACGATCATCAAAAGCTGATGCACCCTGGCATCAAAGCTTACAGCTGTGATCTCTGTGGTAACAAATTCAGGTCGAAGGATGCAGTGGTTAGGCACATGAAAGAGAGACATGCAGACAACGGTCGGAAGCATCAATGCCAATTTTGTGCCAAACTCTTTTACACCGATCGAGAGGTGAAGGGACACGAGAAATGCCATCTGAATGAACGATCCTACATTTGCGATTTTTGCGGCAAAGGATTCAACAATAAATCGGAGCTAAACGCCCATTTAAAGTCGAAGGCTCACAATGCGAATTATGCGATGATAAAGCACAAGAAATACGCTCGGAACAAGGCGAACAACAAAATTGTCTACCGCTGTACACTGTGTGTGCCGGCAACGATTTATCCAAACTTGGAGGAACGAAGGTATCACCGAAATTTGGTCCACAAAGTATTCGACTGCGATGTTTGCAAGAATTCATTCTTAACAATCGAATCGCTGAACAGTCACAGATTGCTGCATTCGAACAAACCGCGACCTCACGTTTGTAAGGTGTGTAACGCTACATTCAGTCAAGCTTCGCACTTGTCGTCACACATGAAATGTAGACACACCGATCGGAAAGCATTTCCATGTTCGTTCTGCGAGAAAACGTTTCCCGAAAATTTTAACCTAACGTCACACGTCAATCTCGTACACAAAAAAGGTGAACGAGTCAAATGCAACAAATGTCATGCGGACTTCTCGACAACCAAATATCTAAAGAAACACATGCTGGACAGACATTCAACGAAACCGTCTCGGTATGATTGTAAAGATTGCGGCAAGAAAAACAGTTCGGGTCAAATGTTGGCGCTACATCGACTGAAATTTCATAATACCGAATTCGAAAGGACCTGCAAACATTGTGATGCGCCAACGTTTTCATCGTTGGCACGAATGTACAGCCATCAAAAAGAGATGCACCCGGGCATTAAAATCTACAGCTGTGATCATTGTGGTGCCGAATTCATTAGCAAGAGTGCAGTGACCTCGCACATGAACGAAAGACACGCGAACTGTGGCAGAAAGCATCAGTGTCAGTTTTGTGCCAAGCTCTTTTACTCTGATCGCGAGGTGAGAGGACACGAGAAACTGCATTTGAATGCCAGGTCATATGTGTGCAATCTGTGTGGCAAAGGATTCAATCAGAAAACACGTCTGAACGTTCATCTACGCTCTAAGGCTCACAATGCGAATTATAAGACGGTAAAACACAAGAAATACCCGCGGAAGAAACAGATTTACAAAAAAACCTACCGCTGTGAACAATGTGTGCCAGCCACTGTACATTCGAACGCGGAGGAATTAGCCAATCATCGTAATTTGGTGCACAAAGTTTACGAATGTAACGTatgcaaaaattcgtttttaactttaaatacGCTAAACAGTCACAAGCTTCTACATTCGACCAAGCCGAGACCGCACGTTTGTTCgGAGTGCAACGCTACATTCAATCAATCCTCACACTTATCGTCACACTTTAAACGAAAACACACAGCCGAAAAGTCCTTCGAATGTGAACTCTGTGATAAAgcgtttttcgaaaattttgagctCAACTCGCATATGAATCTCGTGCACCGAAAACAGGAACGAGCCAAATGCAACGAATGTGGTTCGGATTTCGCATCGAACAAATATCTTAAGAAGCACATTCGGCTTCGGCACTCAGCGGCGTCTCCGTTCAAATGTAACGATTGCGGTAAGAAGAACGAGTCTCTAGGAAAATTAGAGCTACATCGACTGAAATGTCATAAGGCGGCCAATCAAAAATGTGAATTGTCTGCAGAGGGTAGTTGA
- Protein Sequence
- MGYNDFLDLITRNTSNKLEDYKELCRICLENQPNSVDISDNSYVNRSEEIRSNYTAITKQYLPTSDEYPKFVCRSCEINLSQLARFAQQIEENAENWEIFLSRRRMEECADIVDTIKIEFCEEECDNGPATDTHIYDALEVAELPPIKIEEIFAAPLPAIDKPRKKYKRKPKPSFVTTEFERTCQHCDEPTFKSLTRLYDHQKLMHPGIKAYSCDLCGNKFRSKDAVVRHMKERHADNGRKHQCQFCAKLFYTDREVKGHEKCHLNERSYICDFCGKGFNNKSELNAHLKSKAHNANYAMIKHKKYARNKANNKIVYRCTLCVPATIYPNLEERRYHRNLVHKVFDCDVCKNSFLTIESLNSHRLLHSNKPRPHVCKVCNATFSQASHLSSHMKCRHTDRKAFPCSFCEKTFPENFNLTSHVNLVHKKGERVKCNKCHADFSTTKYLKKHMLDRHSTKPSRYDCKDCGKKNSSGQMLALHRLKFHNTEFERTCKHCDAPTFSSLARMYSHQKEMHPGIKIYSCDHCGAEFISKSAVTSHMNERHANCGRKHQCQFCAKLFYSDREVRGHEKLHLNARSYVCNLCGKGFNQKTRLNVHLRSKAHNANYKTVKHKKYPRKKQIYKKTYRCEQCVPATVHSNAEELANHRNLVHKVYECNVCKNSFLTLNTLNSHKLLHSTKPRPHVCSECNATFNQSSHLSSHFKRKHTAEKSFECELCDKAFFENFELNSHMNLVHRKQERAKCNECGSDFASNKYLKKHIRLRHSAASPFKCNDCGKKNESLGKLELHRLKCHKAANQKCELSAEGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -