Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: -
Assembly: GCA_016920775.1
Location: JAFDOW010000804.1:1108649-1112712[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0014 0.07 13.5 4.6 1 23 166 188 166 188 0.96

2 11 2.3e-06 0.00012 22.2 1.3 1 23 194 216 194 216 0.99

3 11 0.00015 0.0076 16.5 2.9 1 23 222 245 222 245 0.96

4 11 0.01 0.51 10.8 3.5 1 21 251 271 251 273 0.95

5 11 0.00016 0.0081 16.4 1.9 1 23 279 301 279 301 0.99

6 11 3.2e-05 0.0016 18.6 1.2 1 23 307 329 307 329 0.98

7 11 0.0015 0.075 13.4 1.4 1 23 337 360 337 360 0.96

8 11 0.016 0.79 10.2 1.8 2 23 367 388 366 388 0.97

9 11 0.00016 0.008 16.4 0.3 1 23 394 416 394 416 0.99

10 11 5.7e-05 0.0029 17.8 1.6 1 23 422 445 422 445 0.95

11 11 1.5e-05 0.00076 19.7 3.2 1 23 459 483 459 483 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0014	0.07	13.5	4.6	1	23	166	188	166	188	0.96
2	11	2.3e-06	0.00012	22.2	1.3	1	23	194	216	194	216	0.99
3	11	0.00015	0.0076	16.5	2.9	1	23	222	245	222	245	0.96
4	11	0.01	0.51	10.8	3.5	1	21	251	271	251	273	0.95
5	11	0.00016	0.0081	16.4	1.9	1	23	279	301	279	301	0.99
6	11	3.2e-05	0.0016	18.6	1.2	1	23	307	329	307	329	0.98
7	11	0.0015	0.075	13.4	1.4	1	23	337	360	337	360	0.96
8	11	0.016	0.79	10.2	1.8	2	23	367	388	366	388	0.97
9	11	0.00016	0.008	16.4	0.3	1	23	394	416	394	416	0.99
10	11	5.7e-05	0.0029	17.8	1.6	1	23	422	445	422	445	0.95
11	11	1.5e-05	0.00076	19.7	3.2	1	23	459	483	459	483	0.97

Sequence Information

Coding Sequence: ATGTCTACTCGTCAAGAGGAGATCCAAGTTAAGTTGGAGGGTAACGAACTGCAGTCGTATCTGGAAACGTTCAACAAAGAAATCGAGGGAAATGACAGTCAAGCAGCCGCCGAAaatgaagacgaagaagaagttCTGTCGGGTGAAGAGGAAGACGGCGATCAATATTTTGTAGACAGCAGTGGAAATTACTATTTTCAAGGGAAAAACGATAAAGTGCCGCGGTTGACAAAGAATCCAAACCTCGTACAGGATGACGACGAACCAGAAACCAATGAAGGCCAAGAGGAAAGTGCTGAGGTCAGCTACGTTTTCATAATGGAtgagaatgaagaaaaaatcgaaGAGGAGGACGAAGAAGGTCAAAAGGTCTACGAATTTGAAGACGGCCAAGAAGAGCAGTCCATTTTCGGTGGCCCAGAAGATCGTCATGTTCCGAAAAAGGTCGTTCGCACTGTTTCGAAAAAGGCAGGCGGTTCAAACCAAAATCAAGTGCACTTCTGTACTTATTGCAATTACAGCAGCCCGAAACGATATTTACTGTCTCGTCATATGAAATCGCATTCCGAGGAACGACCGTTTAAGTGTCAAGTGTGTGAACGAGGCTTTAAAACGCAGGCTAGCCTGCAAAACCATACCAACACTCATACCGGAACAAAGCCTCACAGTTGTAAATATTGTTCGAGTTCGTTTACAACGTCAGGCGAACTAGTTCGTCATGTGCGCTATCGACACACACACGAGAAGCCCCACAAGTGTACCGAATGTGATTATGCCAGTGTCGAATTGAGCAAATTGAAACGCCACATCCGATGTCATACGgGAGAACGCCCCTATCAGTGCCCTCATTGCACGTACGCATCGCCGGACACATTCAAACTGAAGCGACACTTACGGATACATACTGGCGAAAAACCGTACGAATGTGATGTGTGTCATGCTCGATTCACCCAATCCAATTCATTGAAGGCCCACAAACTAATCCACAGCGTCGGTGACAAGCCAGTATTCAATTGTGAATTATGTCCGACAACGTGTGGAAGAAAGACGGATCTTCGAATTCACGTGCAAAAACTGCACACGGCTGACAAACCGTTGAAATGCAAACGGTGTGGAAACTTATTCCCCGATAGGTACAGTTACAAGCTTCACAGTAAAACGCACGAAGGAGAAAAGTGTTACAAGTGTGAACTGTGTCCGTACGCATCCATATCGGCTCGACATCTCGAATCCCACATGCTCATTCACACCGATCAAAAGCCATTCAATTGTGACTTATGCGAGCAGTCGTTTAGACAAAAGCAATTGCTCAAACGTCACGTAAATCTCTACCACAATCCCGATTACGTTCCGCCAAAACCCAAGGAAAAGAATCACAAATGTCCAAACAGTCTATGTACTCGATCATTCCGGCACAAAGGAAATCTAATTCGACATATGGCACTGCACGATCCCGATTCCAGCATACGCGAAGAAGCCATTGCATTGAAAATGGGCCGAAGGAAACGCATTCAAATCATCGACGGCCAACAGGTCGAGATCTACCAGTCGAACGATGATTCCGAAGAGGAGGAAGAAGAGGATGAAGACGACGAACAGGAGGAATATCTCGATGAAGTGAAACCGAAGATGGAAATCGAGGGAAAGCGAAAGGAAATGTATGTGAATGTGGGCGACAACGGACAACAGTATGTGGTGCTGGAGGTACTGGAAATGGGAGATGGTGACGAGGACGGTAGACCGAAACAGGAAGTCGTTTATGAGGAGGAAGAAGAAATCGAGCAGATCAACGAGGAGGATCCAATGGACGTTGATACCGATTTCATCATTGGAGATGAATTAACCGATGACTTAGATGCAATGGGTACATCGAAGTTCCGTGAACAGCCGCACAAAATGCTATCCGACGATAAGGATATGTCCAATTGTTTTGGATTCGATGACGATGATGACGACGATGAAATGGCTGCAGCAGATGGTGAAAATGATGATAAAAGGACAATTCGGTTATTGGACGAATATGTTATAACTTAG
Protein Sequence: MSTRQEEIQVKLEGNELQSYLETFNKEIEGNDSQAAAENEDEEEVLSGEEEDGDQYFVDSSGNYYFQGKNDKVPRLTKNPNLVQDDDEPETNEGQEESAEVSYVFIMDENEEKIEEEDEEGQKVYEFEDGQEEQSIFGGPEDRHVPKKVVRTVSKKAGGSNQNQVHFCTYCNYSSPKRYLLSRHMKSHSEERPFKCQVCERGFKTQASLQNHTNTHTGTKPHSCKYCSSSFTTSGELVRHVRYRHTHEKPHKCTECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDVCHARFTQSNSLKAHKLIHSVGDKPVFNCELCPTTCGRKTDLRIHVQKLHTADKPLKCKRCGNLFPDRYSYKLHSKTHEGEKCYKCELCPYASISARHLESHMLIHTDQKPFNCDLCEQSFRQKQLLKRHVNLYHNPDYVPPKPKEKNHKCPNSLCTRSFRHKGNLIRHMALHDPDSSIREEAIALKMGRRKRIQIIDGQQVEIYQSNDDSEEEEEEDEDDEQEEYLDEVKPKMEIEGKRKEMYVNVGDNGQQYVVLEVLEMGDGDEDGRPKQEVVYEEEEEIEQINEEDPMDVDTDFIIGDELTDDLDAMGTSKFREQPHKMLSDDKDMSNCFGFDDDDDDDEMAAADGENDDKRTIRLLDEYVIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00245703;
90% Identity: iTF_00245703;
80% Identity: -