Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: salm
Assembly: GCA_016920775.1
Location: JAFDOW010000806.1:2728281-2741206[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.7e-05 0.0014 18.8 1.0 1 23 338 360 338 360 0.98

2 8 1.1e-05 0.00057 20.0 2.1 1 23 366 388 366 388 0.98

3 8 0.84 42 4.7 6.6 2 23 668 689 668 689 0.97

4 8 3.1e-08 1.6e-06 28.1 1.0 1 23 695 717 695 717 0.98

5 8 0.0046 0.23 11.8 2.0 2 23 971 992 970 992 0.97

6 8 3.1e-08 1.6e-06 28.1 1.5 1 23 998 1020 998 1020 0.99

7 8 1.5e-05 0.00074 19.7 6.2 1 23 1207 1229 1207 1229 0.98

8 8 4.5e-07 2.3e-05 24.4 0.2 1 23 1235 1257 1235 1257 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.7e-05	0.0014	18.8	1.0	1	23	338	360	338	360	0.98
2	8	1.1e-05	0.00057	20.0	2.1	1	23	366	388	366	388	0.98
3	8	0.84	42	4.7	6.6	2	23	668	689	668	689	0.97
4	8	3.1e-08	1.6e-06	28.1	1.0	1	23	695	717	695	717	0.98
5	8	0.0046	0.23	11.8	2.0	2	23	971	992	970	992	0.97
6	8	3.1e-08	1.6e-06	28.1	1.5	1	23	998	1020	998	1020	0.99
7	8	1.5e-05	0.00074	19.7	6.2	1	23	1207	1229	1207	1229	0.98
8	8	4.5e-07	2.3e-05	24.4	0.2	1	23	1235	1257	1235	1257	0.97

Sequence Information

Coding Sequence: ATGACGGTCTACAACACCTTCGGTCTGcGTGACAACACGACTGGATGTTCCGAAGAGGATGTTCTATTGGCAGACACAAACAGTTTAACAGTTGAACCATGTCATGATAGTGCATTTGATGATGAACAAACCGTGTCTAGTCATCCAAAAGAAGTGCTGTGCAAAAagaacgaaaatttaaaaatgaattgtaCCGGCGATATGGACACTGATGAATCGTACCATGAAAGTGAGGGTGACGAAATGGAACGTTTGAATTTAAATGACGGCAAAATATCAAAACACAATGAAGATGCGGCTAACAATAATGGCAATCATGATGGTGGTGAAGAGAATGGAGACGACGAAACTGAGAAGTCTGAACAAACGGATCAACTATCGGACGGTCAATTTGGTGCGCCGGGCTACTTTTCATTGGAAGCATTGCAGAAAATGGCACAATTTGTGTCGGCTGCCATTGCTAACAATAGCGATAACGAGGATGCCCAAAAACAATTGGCTGTTTTACAAACAACGCTGTTCACATTACAACACCAGCAACTTCAGCAGTTATCAATAAATCGATCGGATaaggatgatgatgatgttgacgAGGAAGATGAACGTGAAGAAGGTGAATTAACTCAAGAGCAAATGGATGAAGAGCAAAGGAAATATGAAGAAGAACAAAGACAAATCCGAAAGGAAGAGGAGGAAAGCTTAAAAGCTAAGAAGGAAGCAATGTCAGATAAGGAAAAGGAAGGATTTCAACCTCTTAATCCTAACCTTCCTATCGGCCCCAACGATTCGATATCGGCAATGGAAGCGTCATTCAGCTCGTCCTTCGCGTCAACCATAATTACCAATCACGATCAGCCGTCGTCAATGGATGGTCTGAATTCGTTGGAAATGCTACAAAAACGAGCTGAAGAAGTGCTGGATTCAGCATCGAGGGGAATTCTCTCGGGCAGTCTGGCCGATGaaatgtcgttcaaaaatgaCGGCAAAGGTCGAAATGAACCATTTTTCAAGCATCGATGTCGATTTTGTGGAAAAGTGTTTGGTTCGGACTCAGCTTTACAGATACACATCAGATCTCATACCGGTGAACGGCCCTTTAAGTGCAATGTATGTGGTAGTCGATTTACAACCAAGGGAAACTTAAAAGTTCATTTCCAAAGACACACACAGAAATTTCCACATATCAATATGAATCCACATCCAATTCCTGAACATTTAGACAAATTTTATCCTCCGTTACTGCCTCCATTGCCACCAGGCCAACAACCGCCAATATCACCGCCTCCACCACAATCGTCACGTCCACCAGCACCAATGAATCTACCATTTCCACCAATTCCTGGCCTACCGCCAGGTTTACAAGGTTTCCAAGGCATTCCGGGTCTACCACTGTTTCGGCCACCATTTGACTTACTGAAACAAATGGGAGCGCATCCATTTTTCGGCGCCATTCGAGATGCTGTCCACCAGGAGCAACGACAAGaagctgaaaaacaacaaaCGGAAGAGCAAGTCAGTCCTGCCGATCTCAGTAAACCTCCACTCATTACCAGTCCGAAAATCAAGGATGAACCCAAAGAGGAATCAGTTAGTCCGCAACCATCCGAAGAAACACAGAATTCAATTGAACCAAAATTGAACGATGAAGTGGTGGACAAACCAAAGTCAAGTGAATCTCCACCTCCCATATGGAAGGAAAGAGACTTGAGAAAAGACTGCATATCACCAGCGAAGAGCATTGAAGGCTACTCGTCACCGAAAGATCAACCggaaaatctatcaaaaatcTCTGCCAAACTATCGCCCAGCAGCATAGGCTCGTCACGAGATAATCACATAATGGataatcaaaatgaaatcaaaatttttccgtCGATGATGCCGCGTCCAGGCAGCACAGATAATTCGTGGGAAAGTTACATAGAAGTAGATAAATCATCGGAAACATCAAAGCTGCAACAGCTTGTGGATAACATAGAAAATAAGATAACCGATCCAAATGAATGCTGTGTGTGTCACAAAGTGCTATCGTGCAGGAGCGCATTGCAGATGCATTATCGTACCCATACCGGTGAACGCCCGTTCCGTTGTAAAATTTGCGGTCGCGCTTTTACTACCAAAGGCAATCTGAAAACCCATATGAGCGTTCATCGCATGAAACCACCAATGCGGACAATACATCAATGTCCCTGTTTGTCACAAAAACAACATATTCGCTTGCATACCGGCGAACCAACCGACCTAACAGCGGAACAAATCCAGGCCGCCGAGATACGTGATTTTCCATCCATGTCGCCGGGATCATTCCCAATGGGCCTAAATCCGTTTGCCTTTCCCATTCCTGGTATGCATCCTGGTTCGATCGGACCAGAATCATCCATCGGTGAGAATGACGACTTTATGGACGAAGATTTTGACGACGCCAGCAATTTCGACGAGAATATGTCGAATGCTGGTTCGGTATCCGGCGATTCAACACAAAACATATCGAATTATTCTCGGGCAAACAATGACGACAATAATCATTCACGTGCAATTAGTGCTATGTTAGCTGAGCATAGTAAAACAACGGAAAATCTATCTAGAGCTCCGTCATCAGCAAGTCGAGCTGAAAGCGTCGACGATAAGAGTTTAAGTCCCCGAACGCCACCACAATCATCACCAGCCCCGTCTGACATATCTCAAGGTGCATTAGATTTAACGCCACGGTCTGAGCCAAAGCACAGTCCTCCAATGATTCCACAACCACATGCCGGTATTGCTGgctttccgaattttccattcATGCCACATGTTGCAACTACATCGGCACCATCAATGATGAATAGCGCATTTAATTCGTTAGCTCAATCAGTATCACCAATGGGACCTTTCAATCCAATTGCTATGGCCGGCATGCGGGGTAATACAACGTGTAAAATTTGCTTGAAAACTTTTGCATGCCAATCGGCGCTTGAAATCCACTACCGGAGTCATACCAAGGAACGACCGTATAAATGCACCATCTGCGATAAGGCATTTACAACGAAGGGTAATATGAAGCAGCACATGATGACACATAAATTACGTGACATGCCACCGCATATGTTCGGCTCAACACCGCAACCAATACCACAATCCGAGTCGCCGATTCGATCGCCCGAGCAGAAGGAGACACCACAGATTCGAATCAAATCAGAAGCGGAGCTCAGTCCACGGTCCGAGAACAGTCGGGGTACAACCACTTCGTCGAATAATGATCGGTCGAGCAGCAAGCGAGAGCGATCATTACCGCCACAATTTCAAATTCAACCGGAAAATAACTACCAAATGATGATGGATCGACAACAGGCGAAGTCTGAGGCACGATTGAAGCGAGCACAAGCAGAGAATGAACAACCGATAGCTAAAAGGCCGTTAGTGACCGAGTCGCTCGTACAGGAACCCATTTCACTGAACAATAAGAAGGAGGCATTTCACATGCCCCCGCATCCAGAAGAGAAAACTTCGTCGCATTTGGAACGTTTGCAGCAATTTCATACGTCATCACTGCTAAATCAACCGCTAAAAATGGATGCTCATCTGAAAGCGACAACATCGCCTGGTTCAGACATTGGGTCTGGCAGTGGTGATCAGAAGCACTATTGTCATTTATGCCAAAAGAACTTTAGCTCCACGTCATCGCTGCAAATACACATGAGAACTCATACGGGCGAAAGACCCTTCGTTTGTAATGTCTGCCAGAAGGCGTTTACGACTAAAGGAAATTTAAAGGTACACATGGGAATTCATACGTGGAGCGGTGCATCTCGTCGCGGACGTCGAATGTCGTTAGAATTGCCATTTAACGGTTCGATGCCCTTAATGCTACAAAATCCCGATTTCCTTCAACGTCATTCAGACTTTTTCCATCCATATCCACCAACTCATCTACTCGGTCGCATGCAACAGTCAATGAATATGGAACAGCAAAAATTTGAACGGGGGGCACCACAACCACCTATATTAAACTTAGCGCATAAGTATATGAATGCAAACGGTCTCGGCGGCCTAGCCGGCCATCCAATGTCCAATCATATTGATAATCGCCAACCACCATACAATTCATCACCGTCGCCATCAAGTGATAAGCATACAGCATCGCCAAACAGTTTGCGCGATGACATGCTGATGGATTCGCCGAAACGGAATGGTGATTTGTCGCCAACGCGAACCGTCACACCGGACTTATCGCCTCGATTATGGAAATTGCATTATGAAAGCAAAGCGGTCAATCGAGACAATATCGATGCGAAAAGTGACGATCAGGCGAAATCGGTTGAAGAACTGATCGCCTAG
Protein Sequence: MTVYNTFGLRDNTTGCSEEDVLLADTNSLTVEPCHDSAFDDEQTVSSHPKEVLCKKNENLKMNCTGDMDTDESYHESEGDEMERLNLNDGKISKHNEDAANNNGNHDGGEENGDDETEKSEQTDQLSDGQFGAPGYFSLEALQKMAQFVSAAIANNSDNEDAQKQLAVLQTTLFTLQHQQLQQLSINRSDKDDDDVDEEDEREEGELTQEQMDEEQRKYEEEQRQIRKEEEESLKAKKEAMSDKEKEGFQPLNPNLPIGPNDSISAMEASFSSSFASTIITNHDQPSSMDGLNSLEMLQKRAEEVLDSASRGILSGSLADEMSFKNDGKGRNEPFFKHRCRFCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTQKFPHINMNPHPIPEHLDKFYPPLLPPLPPGQQPPISPPPPQSSRPPAPMNLPFPPIPGLPPGLQGFQGIPGLPLFRPPFDLLKQMGAHPFFGAIRDAVHQEQRQEAEKQQTEEQVSPADLSKPPLITSPKIKDEPKEESVSPQPSEETQNSIEPKLNDEVVDKPKSSESPPPIWKERDLRKDCISPAKSIEGYSSPKDQPENLSKISAKLSPSSIGSSRDNHIMDNQNEIKIFPSMMPRPGSTDNSWESYIEVDKSSETSKLQQLVDNIENKITDPNECCVCHKVLSCRSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMSVHRMKPPMRTIHQCPCLSQKQHIRLHTGEPTDLTAEQIQAAEIRDFPSMSPGSFPMGLNPFAFPIPGMHPGSIGPESSIGENDDFMDEDFDDASNFDENMSNAGSVSGDSTQNISNYSRANNDDNNHSRAISAMLAEHSKTTENLSRAPSSASRAESVDDKSLSPRTPPQSSPAPSDISQGALDLTPRSEPKHSPPMIPQPHAGIAGFPNFPFMPHVATTSAPSMMNSAFNSLAQSVSPMGPFNPIAMAGMRGNTTCKICLKTFACQSALEIHYRSHTKERPYKCTICDKAFTTKGNMKQHMMTHKLRDMPPHMFGSTPQPIPQSESPIRSPEQKETPQIRIKSEAELSPRSENSRGTTTSSNNDRSSSKRERSLPPQFQIQPENNYQMMMDRQQAKSEARLKRAQAENEQPIAKRPLVTESLVQEPISLNNKKEAFHMPPHPEEKTSSHLERLQQFHTSSLLNQPLKMDAHLKATTSPGSDIGSGSGDQKHYCHLCQKNFSSTSSLQIHMRTHTGERPFVCNVCQKAFTTKGNLKVHMGIHTWSGASRRGRRMSLELPFNGSMPLMLQNPDFLQRHSDFFHPYPPTHLLGRMQQSMNMEQQKFERGAPQPPILNLAHKYMNANGLGGLAGHPMSNHIDNRQPPYNSSPSPSSDKHTASPNSLRDDMLMDSPKRNGDLSPTRTVTPDLSPRLWKLHYESKAVNRDNIDAKSDDQAKSVEELIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01266224;
90% Identity: iTF_01266224; iTF_00245716;
80% Identity: -