Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: -
Assembly: GCA_016920775.1
Location: JAFDOW010000469.1:1737843-1740603[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.09 4.6 7.8 1.4 1 19 174 192 174 194 0.95

2 11 0.0031 0.16 12.4 0.3 2 23 204 225 203 225 0.97

3 11 7.5e-05 0.0038 17.5 1.8 1 23 231 253 231 253 0.98

4 11 3.9e-05 0.002 18.3 4.4 1 23 261 283 261 283 0.98

5 11 1.6e-05 0.00082 19.5 2.9 1 23 313 335 313 335 0.98

6 11 0.00084 0.042 14.2 4.6 3 23 342 362 341 362 0.99

7 11 9.1e-05 0.0046 17.2 0.2 1 23 368 390 368 390 0.95

8 11 1.2e-06 6e-05 23.1 6.5 1 23 396 418 396 418 0.97

9 11 9.7e-05 0.0049 17.1 1.6 1 23 425 447 425 447 0.98

10 11 0.0023 0.12 12.8 4.2 3 23 455 475 455 475 0.99

11 11 1.9e-06 9.8e-05 22.5 0.9 1 23 481 503 481 503 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.09	4.6	7.8	1.4	1	19	174	192	174	194	0.95
2	11	0.0031	0.16	12.4	0.3	2	23	204	225	203	225	0.97
3	11	7.5e-05	0.0038	17.5	1.8	1	23	231	253	231	253	0.98
4	11	3.9e-05	0.002	18.3	4.4	1	23	261	283	261	283	0.98
5	11	1.6e-05	0.00082	19.5	2.9	1	23	313	335	313	335	0.98
6	11	0.00084	0.042	14.2	4.6	3	23	342	362	341	362	0.99
7	11	9.1e-05	0.0046	17.2	0.2	1	23	368	390	368	390	0.95
8	11	1.2e-06	6e-05	23.1	6.5	1	23	396	418	396	418	0.97
9	11	9.7e-05	0.0049	17.1	1.6	1	23	425	447	425	447	0.98
10	11	0.0023	0.12	12.8	4.2	3	23	455	475	455	475	0.99
11	11	1.9e-06	9.8e-05	22.5	0.9	1	23	481	503	481	503	0.98

Sequence Information

Coding Sequence: ATGGTTCTACGAATTTCAGCAGCATCGATTCGGTACCGCAAAGAATTTAATTCAGCCAACAAACATGGCGATGAGACATTGGAAAATTGGTATGATCGGTTGAAAGTCCTAGCGGAATCATGCGACTACGGAACGTATTTGGAGGCATTTATTTTGAACCAGTTCATCTGCGGTCTGGATGCACTGATACTGGAGTATTTGAATGCGGAACAGAAAGACTTGTCGTTGGACGATGTGTTTGAATTGACGAAGAGTTTCGTGCACAGTAATGAGCTGGTGGATGTGAAACCAGTCTTGGTCAACATAAAACTGGAAGAGCTGCAAGGATCAGACGATGAACACTTCAATGACAATGCGTACAGTGATAGTGATGATGACGAGCAAGGGACTACGAATGAAGTAAACGATATGCGACCGAATGGTGCCCAATCTGAGGAAGATCCGAGAAAAGATAGCATTCAGGCGATGGTGCCATTTATGGCGGAAACAACGATTGAATCGCCCGAAGTCCCAAGATTGTTCGAGTGCTATTTGTGTCACAAGACCTGGAAAACGGCCGGCAATTTGACTTACCACTTCACCTGCTACCACACAACCGGAAAAACATCGAAATGCAACCTGTGCGGAAAGTGGATTAAAGACGCTAGCAACATGGTTCGTCACTTGAATTcgcattttaaaacgaaacagtTCCGCTGCAGCATGTGCGACTCGGAATTCGCTCGGTACACGTCGTTGAAAAAGCATTTACAGAGCCACAGCGAACCGAACGCAAAGGAGTTCAAGTGCTCCAAGTGTTCGAAAGTATTTATTACCAGGATGCACTTCAAGGCACATTTGAAGGAGCATAAACGACCCGAAGTCAGTTTGAGTCAAAGTTTGGACAATttgattaagaagaagaaaGCCAAAGCAAAATCGGCTGCGCAGGGAAGCCACCAATGTCATATTTGTTCGACATCGTTTGTCAAAGAAACCGAGCTAAATGTCCACATGAAAGTGCACACCGAAACCGAATGGCTTTGCCATCTGTGCGGCAAAAAACTGATGAACAAACGGAATTTGATCCATCACTATCGCGTCCATAGCGATGAGAAGCCGTTTGCCTGTGACGAATGTGGTCGCACGTTTGCATCCAAGGAGAAATGGAAGCTGCATGCGAAGGGTCACAGTGGCATTCGACCGCACAGTTGTACGCATTGCGATAAGTCGTTCATCCAGAAGGGTCATCTGGTCAAACACATGAAAGTGCACTTTCCTGACGAGCGCAGATTTAAGTGCGACCAATGCAGCAAGGACTTTAGTAAGGAAGAACGATTGGAGAGACATTTGCTTAAGCACGCCGGACTTAGGCCGGTGGGATGCAATTACTGTGAAAAGAGGTTCAGGTCGAACAACCACCGCATTGAACATGAACGAACGCACACTGGCGAAAAACCGTACCGTTGCCCAATCTGCGACAAATGCTTCGGACAACGGGCAACTCTAAGAGGTCATGTGAAAATTCATTCGAAGCCACCAAAACCGAAATCAGATCGTCcgaaaaaacgaagaaaaccgAAGGTGGATAACCCCATTGGATACAGTATAGTAGAGGCTACAGCTGCTTACCTGGGTTAA
Protein Sequence: MVLRISAASIRYRKEFNSANKHGDETLENWYDRLKVLAESCDYGTYLEAFILNQFICGLDALILEYLNAEQKDLSLDDVFELTKSFVHSNELVDVKPVLVNIKLEELQGSDDEHFNDNAYSDSDDDEQGTTNEVNDMRPNGAQSEEDPRKDSIQAMVPFMAETTIESPEVPRLFECYLCHKTWKTAGNLTYHFTCYHTTGKTSKCNLCGKWIKDASNMVRHLNSHFKTKQFRCSMCDSEFARYTSLKKHLQSHSEPNAKEFKCSKCSKVFITRMHFKAHLKEHKRPEVSLSQSLDNLIKKKKAKAKSAAQGSHQCHICSTSFVKETELNVHMKVHTETEWLCHLCGKKLMNKRNLIHHYRVHSDEKPFACDECGRTFASKEKWKLHAKGHSGIRPHSCTHCDKSFIQKGHLVKHMKVHFPDERRFKCDQCSKDFSKEERLERHLLKHAGLRPVGCNYCEKRFRSNNHRIEHERTHTGEKPYRCPICDKCFGQRATLRGHVKIHSKPPKPKSDRPKKRRKPKVDNPIGYSIVEATAAYLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -