Bodo012712.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- grau
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010001358.1:383771-390780[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.081 4.1 7.9 0.7 6 23 240 257 240 257 0.99 2 22 1.1 57 4.3 0.3 2 23 277 300 276 300 0.93 3 22 0.0075 0.38 11.2 0.7 6 23 309 326 309 326 0.99 4 22 0.00051 0.026 14.8 5.4 3 23 334 354 333 354 0.96 5 22 0.13 6.8 7.2 0.7 1 23 362 385 362 385 0.96 6 22 0.17 8.6 6.9 3.8 1 23 393 416 393 416 0.96 7 22 0.0024 0.12 12.7 2.8 1 23 422 445 422 445 0.94 8 22 0.055 2.8 8.4 0.2 2 23 454 476 453 476 0.94 9 22 0.00047 0.024 14.9 0.3 2 23 483 505 482 505 0.94 10 22 0.11 5.7 7.5 0.5 1 17 510 526 510 527 0.92 11 22 0.51 26 5.4 0.1 2 23 708 731 707 731 0.88 12 22 2.2 1.1e+02 3.4 4.1 6 23 740 757 740 757 0.99 13 22 0.92 46 4.6 0.0 2 23 777 800 776 800 0.93 14 22 3 1.5e+02 3.0 1.7 6 21 809 824 809 826 0.95 15 22 3.5e-07 1.8e-05 24.8 1.1 1 23 832 854 832 854 0.97 16 22 0.0017 0.087 13.2 0.6 1 23 862 885 862 885 0.94 17 22 0.16 8.2 7.0 3.5 1 23 893 916 893 916 0.95 18 22 0.0012 0.063 13.6 0.5 1 20 922 941 922 942 0.96 19 22 0.037 1.9 9.0 0.1 2 23 954 976 953 976 0.94 20 22 0.0003 0.015 15.6 2.5 3 23 984 1005 982 1005 0.96 21 22 7.3e-05 0.0037 17.5 0.4 1 23 1010 1032 1010 1032 0.97 22 22 7.7e-06 0.00039 20.6 2.9 1 23 1038 1061 1038 1061 0.98
Sequence Information
- Coding Sequence
- ATGGACTCACAACTCTGTCGTTTATGTCTGCAAAACAGTGATGATACAGTAAACATTTGGAAAACATATCAAGATTCGACCATCGCTATAATCTTAGCCAAACATTTCTGGTTCCTCCAGGTTCATTCAAATGATGGATTGACGGAGTGGCTATGTCAAGTGTGTTGGGCACAGaccaaaaattttcacgaattttacCAAAAAGTGGAGGACTTTCAGAAGTCGTATTGGGATTCGACTAAGAATAAGAATGACGGCGATGATATTGATGAGAATGTTGTTGCTGACACTGCCGCTGATGTAGATCCCGAATCGGCTACGGAGACAACCGAGTTTGAATTGGAAGCGATGGATTCGCAAGTAAGTCAAAAAGATGACAGCAATTACGATTGTGAAGAAGGTTCAACCGTGTCAAATGGTAAACCTATTGACCAAACTCCACGCATTTCAAATGATGGAAGCAAACCTGTTGAACCAACCCCACAAGCTGATGACAATGGGAAAACTGTCTTTAGATTAAAGGGGGTCTCCGTGAGACAATCAGAAGAACAAGTCAACAAAACCATCAGAGAGGAACAGAATAGAGAGCTGAACGGTCAAATTCGTGAATGGTTTACTTTGAAATGCGAACTGTGCAGTGCTGGGGATTTCGATACTTTGCTGGCAGTCAAGCGACATTATCGCAAGGAGCATCAGACGACGGGCTACCTGAAATGTTGCGATCAAAAGTTTTATAGCCGCTGTGATTTGTTGGATCACATCCGTTACCACATTTTGTATCCCGATGCGCCTAAAGTGAACGCTGAAATCTATGAATGGTTTACCATGAAATGTGACATTTGCACTGACGTTACTTTTAAAACATTGTTGGACATAAGACGACACTATCGCGGCGTCCACAATGTGCGTGGTTACCTCACCTGTTGTAACAAAAAGTTTAATACACGCCAGGCGATGGTAGCTCATATGCGCAGTCACACCAATCCGGATGCAAACCATTGCGAGCAGTGTAACAGGAGTTTCTCGACGAAACAATCATTGAAGAATCACATCGCCCATCATGTGCCGCTCGATTCACGCGCCTTCAAATGTACCTTATGTTCGAGTAGCTTTGCAAGAGAAGCGATTTTGAAGTATCACGTGAAAATCAAACACACAGCGAAAAACGGTCAGAAGTTTCCTTGCGAGAAATGCAACCGGAGTTATCAATCGGAATTTTTGCTGAAATGTCATATACGGCAGTTCCATGAAACTTTCCCTGATTACGTCTGTGAGGTGTGTGCACGTCAATTCAAATCGAAGCATACTCTCCGAAATCACTTTACCAGCGAACATTCGACAAAACCTCAACCGAGAGTTCAGTGTGACATTTGCGGTAATTGGTTGAAAAATGAAtataatctaaacagacatgtGAATGAAAAGCATAAAGATAACAAACCGACCAAATGCAACATTTGCGACAAAGTTTACCCGGGCAAAGTTAGACTGCGCAAGCATATCAGTTATGTTCACGGCGAAAAGAAATATCGGTGcacattgtgtgaaaaaccgTTCCACAGCCCGTTCGCATTGAAGACCATTGAAAATGTAGTGAACATCTGGGAAACATTTCAGCATTCAACAATCGCCACAATTTTGGCAAAACATTTCTGGTTTCAGATCAAAAAAAATGACGGTCTGACGGAGTGGCTATGCAAGGTTTGTTGGGAACAAACCAAAGCGTTTCACGAGTTCTACGAAAGAGTGGAACAATTTCAGAAGTCGTACTGGGAATCGATTAAGAGCGATGGTGGTGGCAATGATGAGACAATTGTTATTGAACCTGACTTGACTATAGTGAAGTGCGAGGAAACGGAACTGACATTACAAGTGATAGATTCGCAGCTAAATGAAGAGGACGACTCCGATTATAATGACGATGATACATCAAAAACACCACAAACATCCAGTGATAACAGTCAATCATCCGACAAACCTTCACAAAGAGATTATAACCGAAAGGTCTCCACTGGAAGGGACATTAGTTCCTTCAGTCAATCTGACAAAGTGACCAATCAAAAAATCAGAGAAGAACAGAACAAAGAACTGAATGGTCAAATCCGTGAATGGTTCACGATGAAATGTGATATTTGCGACGAAGACGAGTTCGACACTTGGTATGGTGTTAAGCGTCACTATCGCAACGTCCATCAGACTATTGGCTATTTGAAATGTTGCGATCAGAAATTCCATCGCCGTTGTAAGTTATTGGATCACATTCGTCAGCACATTGTCACTCCCGAGTCTAGTAAACTGAACGATCAAATCCGTGAATTTTATTCGATGAAATGTGATATATGCCCCGACGTCCCATTCGGAACATTGGTGGATATGAGACGACATTATCGTGAAGTTCATAAAATGCACGGCTATCTCATTTGTTGTGGCAACAAATTTAATCGGCGACACGCGATCATTGCCCATATGCGATGTCATACCAATCCCGATGAATACCGATGCGAGCAGTGTGGAAAGACTTTCACGACGAGCAAAGCATTGAAAAATCACATCGACAATCATGTGCCGCTCGATTCACGCGCCTTCAAATGTGATTTATGTACGAGTAGTTTCGCTAAAGCGGCGACTTTGAGGCGTCATGTCCAAGATAAACATACTTCAAAAAACGGCGAGAAATTCCCTTGCGAAAAATGCAAGAAAAATTATCGGTCAGAATTGCTGCTGAAATGCCACATTCGGCAGACCCATGACACTTTACACAATTTTGTCTGTGAGATTTGCGCACGTCAATTTAAGTCGAAACAAACACTCCAGAAACACGTTTTCTGCGAACATTCGACAACGCCTCGACCGAAAGTTCAGTGCAATATTTGCGGAAATTGGTACAAAAATGAATACGGTCTTGCTAAGCATATGACCGAGCAACATCGTCATACGGACCCGGTCAATTGTCCCGTTTGCAACAAGGTGTGTCCCACTAAGCACAGACTCAACCAGCATTTGCGAAGTGCTCATGCTGAACGAAAACACGAATGTGTTCTGTGCAACAAAGCGTTTCGGGGTCCTAAGAATTTGAAGGAACACGTTGCAACGCATACCGGTGAAGATCTGTACAAATGTCAGTACtgcgataaaaaattcaaatctagCGCTAATATGTATTCACATCTGAAAAAGGCACATTTGGAGGAATGGACTCAAGAGAAAGAGAAGAAGGCATCTATGGACATGAACGTTGTAACAGATGTTGAAAAATAA
- Protein Sequence
- MDSQLCRLCLQNSDDTVNIWKTYQDSTIAIILAKHFWFLQVHSNDGLTEWLCQVCWAQTKNFHEFYQKVEDFQKSYWDSTKNKNDGDDIDENVVADTAADVDPESATETTEFELEAMDSQVSQKDDSNYDCEEGSTVSNGKPIDQTPRISNDGSKPVEPTPQADDNGKTVFRLKGVSVRQSEEQVNKTIREEQNRELNGQIREWFTLKCELCSAGDFDTLLAVKRHYRKEHQTTGYLKCCDQKFYSRCDLLDHIRYHILYPDAPKVNAEIYEWFTMKCDICTDVTFKTLLDIRRHYRGVHNVRGYLTCCNKKFNTRQAMVAHMRSHTNPDANHCEQCNRSFSTKQSLKNHIAHHVPLDSRAFKCTLCSSSFAREAILKYHVKIKHTAKNGQKFPCEKCNRSYQSEFLLKCHIRQFHETFPDYVCEVCARQFKSKHTLRNHFTSEHSTKPQPRVQCDICGNWLKNEYNLNRHVNEKHKDNKPTKCNICDKVYPGKVRLRKHISYVHGEKKYRCTLCEKPFHSPFALKTIENVVNIWETFQHSTIATILAKHFWFQIKKNDGLTEWLCKVCWEQTKAFHEFYERVEQFQKSYWESIKSDGGGNDETIVIEPDLTIVKCEETELTLQVIDSQLNEEDDSDYNDDDTSKTPQTSSDNSQSSDKPSQRDYNRKVSTGRDISSFSQSDKVTNQKIREEQNKELNGQIREWFTMKCDICDEDEFDTWYGVKRHYRNVHQTIGYLKCCDQKFHRRCKLLDHIRQHIVTPESSKLNDQIREFYSMKCDICPDVPFGTLVDMRRHYREVHKMHGYLICCGNKFNRRHAIIAHMRCHTNPDEYRCEQCGKTFTTSKALKNHIDNHVPLDSRAFKCDLCTSSFAKAATLRRHVQDKHTSKNGEKFPCEKCKKNYRSELLLKCHIRQTHDTLHNFVCEICARQFKSKQTLQKHVFCEHSTTPRPKVQCNICGNWYKNEYGLAKHMTEQHRHTDPVNCPVCNKVCPTKHRLNQHLRSAHAERKHECVLCNKAFRGPKNLKEHVATHTGEDLYKCQYCDKKFKSSANMYSHLKKAHLEEWTQEKEKKASMDMNVVTDVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -