Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: -
Assembly: GCA_016920775.1
Location: JAFDOW010000504.1:313983-316560[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5e-06 0.00025 21.2 5.2 1 23 227 249 227 249 0.97

2 12 2.6e-06 0.00013 22.1 0.1 1 23 255 277 255 277 0.97

3 12 2.3e-05 0.0012 19.1 2.0 1 23 283 305 283 305 0.99

4 12 0.00012 0.006 16.8 0.6 1 23 311 334 311 334 0.95

5 12 0.11 5.5 7.5 1.6 1 23 342 364 342 364 0.97

6 12 3.4e-05 0.0017 18.5 2.9 1 21 372 392 372 393 0.96

7 12 2.8e-06 0.00014 21.9 1.3 1 23 401 423 401 423 0.99

8 12 0.0078 0.39 11.1 1.7 2 23 430 451 429 451 0.96

9 12 0.00089 0.045 14.1 1.7 1 23 458 480 458 480 0.98

10 12 0.0026 0.13 12.6 0.7 1 23 488 511 488 511 0.94

11 12 2.6e-05 0.0013 18.9 0.0 1 23 519 542 519 542 0.93

12 12 0.011 0.55 10.7 0.6 2 23 548 569 548 569 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5e-06	0.00025	21.2	5.2	1	23	227	249	227	249	0.97
2	12	2.6e-06	0.00013	22.1	0.1	1	23	255	277	255	277	0.97
3	12	2.3e-05	0.0012	19.1	2.0	1	23	283	305	283	305	0.99
4	12	0.00012	0.006	16.8	0.6	1	23	311	334	311	334	0.95
5	12	0.11	5.5	7.5	1.6	1	23	342	364	342	364	0.97
6	12	3.4e-05	0.0017	18.5	2.9	1	21	372	392	372	393	0.96
7	12	2.8e-06	0.00014	21.9	1.3	1	23	401	423	401	423	0.99
8	12	0.0078	0.39	11.1	1.7	2	23	430	451	429	451	0.96
9	12	0.00089	0.045	14.1	1.7	1	23	458	480	458	480	0.98
10	12	0.0026	0.13	12.6	0.7	1	23	488	511	488	511	0.94
11	12	2.6e-05	0.0013	18.9	0.0	1	23	519	542	519	542	0.93
12	12	0.011	0.55	10.7	0.6	2	23	548	569	548	569	0.92

Sequence Information

Coding Sequence: atgaatattaaaattgatATTAGTGTGTGCCGGGTGTGTTTGAAAAGCGGCGACGGAAAGTCACTGTTTAGCGATCAGGATGTCGATAAATTGGGTGATAAATTCAAATATGTTACGCAGACAAAGTTGATTAAAGGTGACGGACTACCCGAACGACTGTGCGTCCAATGTGTGCGTCGGCTGAAATTGGCATTTGAATTTCGGAAACAAAGTGAATCTTCAGCGGCCCAATTGAGAAGTTTTATCACGAAAGTAAACAAACAATTCACGCAAGTGGCAACGGTCAGAGAAAATGACAACGATGAAGAGGTTGACATGGACGATTATTTGTTCGACGGGGAATTCGGAGAACAATCACAAGATGAATCGAGTGACGTGCAAACGACTCCCAAGCTGAAGGAGTTGAACGTTGTGGAAATTACGCACAATGTGCAGAAAATTAAAGCTGAAAATGTGGAAACCGAAACCATCGAAGAGATCATATTCGAGAACAATGACGACGAAATCGTCGACAGTAACAACAGTAACGAGGAAGTCGAACAAATAGAAGAGGTGATCTTGGACAATGAAGTGTATGAAGAGGAACATTTACTGGACGAAGTATACCTCGAGGAACAGGAAGAGGCGTTCAGCAATAGTCCACCGAAGAAGCGGGTGAAAAAGGAGTATATGACGCTACACTACTGTAAACGGTGTAACAAGGATTTCAGTACGAAAACCAATCTGCTGCGTCACATACAAACTCACGACGGTGTAAAACCGTACGTATGCAAAATCTGTGGAGCTGGTTTCACTCAAAACGGATCACTGAAGCAGCACATATTCATACACACTGGCGAGCGACCGTACACCTGTAACATTTGTAATCGTGGCTTCACTCAAAGTAAATCGTTGGTCTTTCACATGAGACGACACACCGGCGAGAAACCATTTTCCTGCGACCAATGCGGAGACACCTTCCGTCAGAGAGATGGATTGAAACGACACGAGCTGATAAAACACAATCCCGATGCTGTTAtgaagttttcgtgtgaagtttgcaaGAAGGAGCTATTGTCCCGGTACTCATACCGAAAGCATGTGGAAAAACACTACAGCGGCAACAAAAAGGACTTCAAATGCGATAATTGCGAGAAGAAATTCACGAGCAAGGCGTCGCTGAAGAGTCATATTTGTCAGTTCATTGAGGGCGAGAAAGCATTCAAATGCACCGAATGTGAAGTTGACTTCAGTACAAAAATGCAACTAACGGACCACATGAAAACGCATGAAGACATCAAGCCAATGTCCTGTGAAAAGTGTGACTTGCTATTCGAGGATAAGCAAGAGTATTGCAATCACATCAAACTTCACAATCAGCCTGTGAAGAAGTTCAAATGCAATCAGTGTTCGAAGGCATTTTTAATCAAGAGCAACTTGCTGCAACACTTGAAGAATCACGAACGTATTCTCGACTCGATTCACCAATGCGACGATTGCGATATGGGTTTCGATTCTGTGCGAGCGTTACGCCTACATCGCTCCAATCAACACAACGAAATCATTGACAATTTGTATGACTGCGAGATTTGTGATACGAAATTCATCAATTCGGCTGATCTGAACGCTCACATTGCGGCTGAACATGATGCCATCTTGGAGAAATGTTCTCTGTGCGACGAAGAGTTCACGTCGCTAAGACTATTCGAACAACATAAGGTTGAACATAATATGGAATGA
Protein Sequence: MNIKIDISVCRVCLKSGDGKSLFSDQDVDKLGDKFKYVTQTKLIKGDGLPERLCVQCVRRLKLAFEFRKQSESSAAQLRSFITKVNKQFTQVATVRENDNDEEVDMDDYLFDGEFGEQSQDESSDVQTTPKLKELNVVEITHNVQKIKAENVETETIEEIIFENNDDEIVDSNNSNEEVEQIEEVILDNEVYEEEHLLDEVYLEEQEEAFSNSPPKKRVKKEYMTLHYCKRCNKDFSTKTNLLRHIQTHDGVKPYVCKICGAGFTQNGSLKQHIFIHTGERPYTCNICNRGFTQSKSLVFHMRRHTGEKPFSCDQCGDTFRQRDGLKRHELIKHNPDAVMKFSCEVCKKELLSRYSYRKHVEKHYSGNKKDFKCDNCEKKFTSKASLKSHICQFIEGEKAFKCTECEVDFSTKMQLTDHMKTHEDIKPMSCEKCDLLFEDKQEYCNHIKLHNQPVKKFKCNQCSKAFLIKSNLLQHLKNHERILDSIHQCDDCDMGFDSVRALRLHRSNQHNEIIDNLYDCEICDTKFINSADLNAHIAAEHDAILEKCSLCDEEFTSLRLFEQHKVEHNME

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00245671;
90% Identity: iTF_00245671;
80% Identity: -