Bodo008433.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010001071.1:117866-135028[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.8 1.4e+02 3.0 0.6 2 23 182 205 181 205 0.92 2 19 1.4 70 4.0 0.1 6 23 214 231 214 231 0.98 3 19 0.00011 0.0058 16.9 5.4 1 21 237 257 237 259 0.95 4 19 0.0066 0.33 11.3 0.1 2 23 266 288 265 288 0.95 5 19 3.4e-06 0.00017 21.7 1.1 1 23 296 319 296 319 0.98 6 19 5.2e-06 0.00026 21.1 1.4 1 23 325 348 325 348 0.93 7 19 0.04 2 8.9 4.6 2 23 357 378 357 378 0.98 8 19 0.0031 0.16 12.4 1.9 1 23 390 413 390 413 0.95 9 19 0.021 1.1 9.8 0.8 1 23 418 441 418 441 0.90 10 19 4e-05 0.002 18.3 1.4 1 23 447 470 447 470 0.97 11 19 0.49 25 5.4 4.2 6 23 697 714 697 714 0.99 12 19 8.5e-05 0.0043 17.3 2.5 1 23 720 742 720 742 0.97 13 19 0.00036 0.018 15.3 3.5 1 23 750 773 750 773 0.97 14 19 0.0022 0.11 12.8 1.2 1 23 781 804 781 804 0.92 15 19 0.024 1.2 9.6 0.3 1 20 810 829 810 830 0.94 16 19 0.19 9.7 6.7 0.3 2 23 840 862 839 862 0.96 17 19 0.00054 0.027 14.7 0.1 3 23 871 892 869 892 0.96 18 19 0.01 0.51 10.7 4.4 1 20 897 916 897 919 0.95 19 19 1.8e-07 8.9e-06 25.7 1.0 1 23 925 948 925 948 0.98
Sequence Information
- Coding Sequence
- atgaattcaaattctATGCAACTTTGCCGCTTATGTCTGGAGACTAGTGGCAGTTTAGTGAACATTTTCGAAGCGTTTCAAGACTCAACCGTAGCTTCAGTTTTAGCCAAACATTTCTGGTTTCAGATTAATAAGAATGACGATATGTCGGAATGGGTGTGTGAAATGTGTTGGAGCCAAACGAAAACATTTCACCATTTCTACAATCGACTGGAGCTACGCCATAAGAATCACTTCAACTCAATTGTTTTGAGTCCTATAGAGGAAGCGGTGGAAGCTGTTATCTTTGTAGACAATTATCAAGAAGAAACGGACGTTACTATGAAGACTGACGAAACGGAGAAACCAAGCATGGAAAACAGTTGTGATGAAGATGACGACGATAAAAGTGGCGATCAAAGTATCTTTTCACTTTTAGGTGAGGCTGAGAAAACCATTGATGATGATAATGAACCATCTGTTGATAAGCCTAGTAAATACAACTCGCTCAGTCCATCAGAGATAGAGAAACAGGACGCAGAGATTCGGAGATTTTTTACGATGAAATGCGATATTTGCAGCGACGTTGAATTCGATACCttaaaaaaagtaagaaaacaTTACCGCCAAGTGCACAAAACAAGTGGCCATTTGATCTGCTGTGGAAATAAGTATTCGAGACGCTCCTTAATACTGGACCATATTCAGTATCACGGTAATCCAGACGCACACCGATGTGACCAGTGTGGTAAAAGTTTTAGAAACAGACAGACATTGAGTGCTCACATGAAATGTCACGGACGTGCCAATGCCCTTACATGCAGAGTCTGCCCAAAAACGTACATATCCGTCGCAGCACTGAACTATCACGTTCGAGAAAAACATTCCACGGAGATGAGAGATACATTTCGTTGCGAGCGGTGTGACATAATTTTTCCGACAAGGTACAAATTGACTAGACACATGAAAACCGCACATGGCCCGTCTATTAATCACATTTGTGAAGGATGCGGTAgatcattcaaaaataaacccGATTTGAAACATCACATAGAATTGGAACATTTAACAACGCCGCTGCCCAAAGCTCAATGCAACATTTGCGGTACTTGGGTGAAGCATAAACGTTATCTTCGgcaccatttaaaaatgcacCAAGAAATGCAGGAAGCTCAGAATGGGAAAGTTCACAATTGTCCGATTTGCAAGAAAAAGGTGCAGACCAAAAAATTGTTGGCCAGCCATATTCAATATACTCATAGTGAGAAAAAACATCAaTGTACATTTTGCGACAAAGCATTCAAGTTGGCCAAAATATTGAAGGAACACATAGCAGCACGTCACACTGGTGAAGATTTGTACAGTTGTCCGTACTGTGATAGAAGGTTCAAATCGATTGCGAACATGTACAATCATCGGAAGAAGGCCCATGTTTTAGAATGGACCAGAGACAAAGCCGAAAGATATGGGAAGCCTTGTGAAACCGAATCAGCAGCTAAAATGGCCAATGAAAATGATTGTATGTCGGAATGGCTGTGCCAAATATGTTGgattcaaacaaaaacatttcacgATTTTTATAAGAGAGTGGAGATCCGACATGAAAATTACTTCAGATCGAATGCCATGTCCAACAATAGATTAATAAAGCAAGAACCGAGGTTAGAACGAAGCACTTGTCCGAGAGATGAATCATTGGACTTGGATCTAAATTTAGTGAAATCCGAAGAAACAGAACCGTGCACACAGGTGACTGATATGACAATAAGCAAAGAAGGAAATTGGAAATGCAACGATTACAATGACGATTGTGATGAAAATGATGACAAATCTTCAGTCTCAGATGAGGAACATTcttcaattaaatcaaaaaacgaaaaggcTAGAGACGATTCCAAAACACGAAGCGCGAGAGAACCATCTAAAATTCCAGGGAAAAAATGCAACTGGCACAGTCGAACGGAAAAAGAGAAACAGGACGCCCAGATCCGTGAATTGTTCAGCATGAAATGCGAACTTTGCACGGATGATGATGTCGTCTTTGAATCGCTATTGAGAGCCAGACAACATTACCGCAGCGTTCACAAAATCGGTGGATACCTAACGTGTTGTGGGAAAAAATTTCATCGTCGTCACTTGATTCTGAATCACATCCGAAATCATGTCGATCCAGACGCTTACCGTTGTGACCAGTGTGGTAAACGCTTTCAAAACAAATTCAGGCTGAGAAATCACATCGATAATCACGTACCACTCGATTCACGTGCCCATAAATGTAACTTATGTTCGAGTAGTTTTGGAAGACAGTCTCTTTTGCGGCTACACATGAAAAGTAAACACGAGTCGAAAACGGGCGAAAAGTTTCCGTGTGAAAAGTGCGGCAAGAACTTTCGGTCAAGTTTGTTGCTGTCATGTCATATTCGTGGCGTTCATGAATTTTCGCTTGAGCACGTTTGTGAGATATGCGCTCGTGTATTCAAAACGAAACAGATTCTCCAAAACCACATCTTCTGCGAACATTCCACAACACCGAAAGTACAGTGCAATGTCTGCGGTGCTTGGCTGAAACACGAAATCAGTCTTCGTGCTCACCTGAAACGATATCACGATTCCAGCTTCGAGTCTGTAAATTGTCCAATTTGTAACAAAGAGGTACCGAGTAAACACTCATTGGCCGGTCATATTCGAAGTGTACATGGCGAGAAAGATCATCAATGCACATTTTGCAATAAGGCATTCCAGACGGCGAAGAAACTAAAGGAACACATCGCCTGCCATACAGGGGAAGATTTATACGAATGTCCCTACTGTGATAAGAAATTCAGATCAAGTGGAAACTTGTACGCGCATAGGAAGAAGGCGCATTTGGCGGAATGGTCAAGAGACAAAGCTAATACATCAACGGAACAGAGTATATTAGAAGCTGAAGCGACTTGTAAATTGGTAACTGGAGATCAATAA
- Protein Sequence
- MNSNSMQLCRLCLETSGSLVNIFEAFQDSTVASVLAKHFWFQINKNDDMSEWVCEMCWSQTKTFHHFYNRLELRHKNHFNSIVLSPIEEAVEAVIFVDNYQEETDVTMKTDETEKPSMENSCDEDDDDKSGDQSIFSLLGEAEKTIDDDNEPSVDKPSKYNSLSPSEIEKQDAEIRRFFTMKCDICSDVEFDTLKKVRKHYRQVHKTSGHLICCGNKYSRRSLILDHIQYHGNPDAHRCDQCGKSFRNRQTLSAHMKCHGRANALTCRVCPKTYISVAALNYHVREKHSTEMRDTFRCERCDIIFPTRYKLTRHMKTAHGPSINHICEGCGRSFKNKPDLKHHIELEHLTTPLPKAQCNICGTWVKHKRYLRHHLKMHQEMQEAQNGKVHNCPICKKKVQTKKLLASHIQYTHSEKKHQCTFCDKAFKLAKILKEHIAARHTGEDLYSCPYCDRRFKSIANMYNHRKKAHVLEWTRDKAERYGKPCETESAAKMANENDCMSEWLCQICWIQTKTFHDFYKRVEIRHENYFRSNAMSNNRLIKQEPRLERSTCPRDESLDLDLNLVKSEETEPCTQVTDMTISKEGNWKCNDYNDDCDENDDKSSVSDEEHSSIKSKNEKARDDSKTRSAREPSKIPGKKCNWHSRTEKEKQDAQIRELFSMKCELCTDDDVVFESLLRARQHYRSVHKIGGYLTCCGKKFHRRHLILNHIRNHVDPDAYRCDQCGKRFQNKFRLRNHIDNHVPLDSRAHKCNLCSSSFGRQSLLRLHMKSKHESKTGEKFPCEKCGKNFRSSLLLSCHIRGVHEFSLEHVCEICARVFKTKQILQNHIFCEHSTTPKVQCNVCGAWLKHEISLRAHLKRYHDSSFESVNCPICNKEVPSKHSLAGHIRSVHGEKDHQCTFCNKAFQTAKKLKEHIACHTGEDLYECPYCDKKFRSSGNLYAHRKKAHLAEWSRDKANTSTEQSILEAEATCKLVTGDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -