Bodo003385.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000954.1:2164250-2167052[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.2e-05 0.0011 19.1 2.1 1 23 239 262 239 262 0.98 2 14 0.12 6.1 7.4 0.1 2 23 271 292 270 292 0.93 3 14 0.00011 0.0056 16.9 0.8 2 23 297 318 296 318 0.93 4 14 0.00023 0.012 15.9 0.6 1 23 324 346 324 346 0.95 5 14 0.00065 0.033 14.5 2.4 1 23 352 375 352 375 0.92 6 14 0.00045 0.023 15.0 0.3 2 23 382 404 381 404 0.94 7 14 7.5e-05 0.0038 17.4 6.3 1 23 410 433 410 433 0.98 8 14 2.9e-07 1.5e-05 25.0 0.6 1 23 439 461 439 461 0.98 9 14 0.00013 0.0064 16.7 0.4 1 23 487 510 487 510 0.96 10 14 0.038 1.9 9.0 1.5 1 23 516 539 516 539 0.96 11 14 4.1e-06 0.00021 21.4 1.7 1 23 547 569 547 569 0.98 12 14 0.052 2.6 8.5 0.1 2 23 577 599 576 599 0.95 13 14 0.0054 0.27 11.6 3.9 1 23 605 628 605 628 0.92 14 14 0.0025 0.13 12.7 1.5 3 23 634 655 633 655 0.98
Sequence Information
- Coding Sequence
- atgCCGTCGACAGAAAAATGCAAAACATGTATGGTTCCCGAATGCAGAGCCGACAGCTCTGTCTTCCCCGATCGAATATTCTTTACGGTACCGGAAACTAAAAAAAGACGCTGGCTGGAGATCGTTGGTCAACACAGTGACTCCGTTGACCCAAAGGAGCGACTTTTTTGCTGTGAAAATCATTTCAGTACAAAACGGGACATAGTCGGTTATCATTTCTACAAAGTGTTCGGCGGCAGGATAAAGTTGGAAGATCATGCTTATCCCTGCAAGAATTTGGGAGAAAAGAAATTTACTCCGCCGTGTCGAATACCAATAATTACTGCAGAGCCTACAAAACCACAAGAAAATGATGAGCCTGGTGCCGACGATTCCTTAGATCCACTTGCAACGGTAAATGATTCTGACGGCAGGGACGATTCAGATTGTGATAACAATGATACTGGTTTCGATATCGACCAAGATTCAGAAGATGACGAAGATGCGAAAATCGACTCATCCATGAAATCGTCGACGGTATCAAGAAGTgaagaaattgttgttACATCTGACGTCTATCCTATGGATGATGTTGACGGCGGTGACTTCAGCGACAGTGATGATTTTCCATTGAAGCTCGTAAAGACCGAAAGCAAGTCCAATCCGGATGTGTCCACCAGTAAAAAGGCCAAAGTGACCAAAGCTGATGCGGCCGATAGCAGCAGTTCGAACCGATACAATTGCTCGCAATGTCCAAAGAATTTGTCATCGTCCAGATCGTTGAAGAGGCACATCAAAACATTTCATGTTGATCAGAAGCCGCGCACCATATCGTGTCCGGAATGTAAGGAAACGTTTTTGGTTCGGGAAGAGTACGTCAAACACAAAGCGATACACAAAAAAACTATTGAATGCGATGTCTGTGAAAAGACATTTCGTACTCGTTTTCTGCTCAAGTCACATTACGTGCAGCACCTCAACGAAAAGCCATTTCTGTGCGAAATTTGTTCACGACCATTCGCACGGATGGCCACTCTACAGAAGCATAGATTCACTCATGTAACTGAGAAGACACACATGTGCGAAGAGTGCGGCAAAGCGTTTTCTGCAAATTTCTTACTGAAACAACATGTACACCAATACCATACCAACAACACTACCGTTATGTGTTCGTCATGTTCGAAAACCTTTTCATCTACGGCTCTTCTAAACATTCACATCAAGGCTTATCACGACGAGGTAAACCCATACGAATGTGAGATTTGTCACATGCATTTCAAACATCCGTCCGCATTGCTGCGTCATCGAAAACGTTTTCACGATCCGAGGAATTCGTACCCTTGCGAAATGTGTccgaaaaagttttcaaaactGGAAATGTTGGAACGTCACATGAAAACACATCCGAACAGACCCATGACTCTTGATTCAAAATTGAAACTAAAGGACAAGGTCCAAAAAGCTGTCGAAAAGCCGGTGTTCAAATGCGACGAATGTGGCATCACACTTTGTCGTCCCGATCGTTTAAGAGCTCACCTGGCCAGTCTTCACAATCCGAAAAACCCGCACAGATGTGTTACGTGCCGTCAGACATTTCCGACCGAGATGTTGATGAACCAACACGTAATGCGATTGCACGCACCTGAACATGAATACATTTACAAATGCCACATATGCCCGAAGAAATATAACCAAGAAGCGGCGTTAAAACGTCATGTCAAATTGCATACGGATCCGAAGAAGCCGGTCAGATGTGAATTGTGTGGCAAGATACTGGGCCGACCGAATCGATTAAAGCCGCATATGAGAGCGCTTCACAATCCCGACAATCCACACAAATGCCCCGTTTGTCACCAAACGTTCCGTGAACAAAAAATGCTGGACAGTCACACTACTCAAATGCACGAGCAAACGATACTTTGCCAGTATTGTGCCAAATCGTTTGGCAAACACGAAGGATTACTGCAACATATTCGCAGGAATCACAGCGACTTGCTGTCaattggaaaagaaattaaGATGGAGACTGATGATTAA
- Protein Sequence
- MPSTEKCKTCMVPECRADSSVFPDRIFFTVPETKKRRWLEIVGQHSDSVDPKERLFCCENHFSTKRDIVGYHFYKVFGGRIKLEDHAYPCKNLGEKKFTPPCRIPIITAEPTKPQENDEPGADDSLDPLATVNDSDGRDDSDCDNNDTGFDIDQDSEDDEDAKIDSSMKSSTVSRSEEIVVTSDVYPMDDVDGGDFSDSDDFPLKLVKTESKSNPDVSTSKKAKVTKADAADSSSSNRYNCSQCPKNLSSSRSLKRHIKTFHVDQKPRTISCPECKETFLVREEYVKHKAIHKKTIECDVCEKTFRTRFLLKSHYVQHLNEKPFLCEICSRPFARMATLQKHRFTHVTEKTHMCEECGKAFSANFLLKQHVHQYHTNNTTVMCSSCSKTFSSTALLNIHIKAYHDEVNPYECEICHMHFKHPSALLRHRKRFHDPRNSYPCEMCPKKFSKLEMLERHMKTHPNRPMTLDSKLKLKDKVQKAVEKPVFKCDECGITLCRPDRLRAHLASLHNPKNPHRCVTCRQTFPTEMLMNQHVMRLHAPEHEYIYKCHICPKKYNQEAALKRHVKLHTDPKKPVRCELCGKILGRPNRLKPHMRALHNPDNPHKCPVCHQTFREQKMLDSHTTQMHEQTILCQYCAKSFGKHEGLLQHIRRNHSDLLSIGKEIKMETDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -