Bodo015867.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bradysia odoriphaga
Gene Symbol
-
Assembly
GCA_016920775.1
Location
JAFDOW010001072.1:3494074-3500580[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00011 0.0057 16.9 2.7 1 23 311 334 311 334 0.98
2 15 0.0066 0.33 11.3 1.8 1 23 352 374 352 374 0.97
3 15 0.018 0.92 9.9 0.2 3 23 384 404 382 404 0.94
4 15 8.6e-05 0.0044 17.3 3.0 1 20 408 427 408 430 0.93
5 15 1.5e-05 0.00075 19.7 2.4 1 23 436 458 436 458 0.96
6 15 0.018 0.93 9.9 2.8 1 23 464 487 464 487 0.93
7 15 2.8e-05 0.0014 18.8 0.8 1 23 493 515 493 516 0.95
8 15 1e-06 5.1e-05 23.3 2.7 1 23 522 544 522 544 0.98
9 15 1.9e-06 9.4e-05 22.5 2.7 1 21 550 570 550 573 0.91
10 15 0.00013 0.0067 16.7 2.2 1 23 578 600 578 600 0.99
11 15 0.0018 0.094 13.1 4.1 2 23 611 633 611 633 0.96
12 15 1.9e-06 9.6e-05 22.5 0.9 1 23 639 661 639 661 0.98
13 15 0.0003 0.015 15.6 5.9 1 23 668 691 668 691 0.98
14 15 6.8e-05 0.0034 17.6 1.4 1 23 697 720 697 720 0.96
15 15 1.5e-05 0.00076 19.7 2.0 3 23 728 749 727 749 0.97

Sequence Information

Coding Sequence
atgccTCCGAAGGCAGAAAAGAAGGTGTGCATGGTGCCAGCGTGTGAGGCATCGAGTATCGACTATCCGGACCGAATATTTGTCAGTGTACCCGAGAATAAGAAACGAGAATGGTTGGCAATGGTTGGTGCGGAAAGCGTTTACATCCATCCGACAAAGCGTTTCTTTTGTTGTGAAGAACATTTTGATGTGCGGCGAGATATCAAAGACTATGACTTTTTTAAGCTGTTTGGTGGCCGTGTTAAGTTTGAAGATCATGCATATCCGTTCAAGAATTTGGGTGACGTTCCCGAAGTGATACCACCGACAATCGTTACCGATGGAAAACGCAACACCACTGACATTTACTTTCCTGCCCCATTGCCTGTCACTGTCGTTGAGGAGCAACCGATCGCTGAATCGGACCTGAAAAACAAATCCGATTCCAATTTATGGAAGGAGCAACGCGATGATGAAGAGGATATTGTTttTGTTGACCCATTGTTTACCTCAGAAGAACCGCTGGAGGCGATTGCGTCGAACATTAAAGTGGACGACGAAGATGAGTTTGGCGTGTCGGAAAGCAAATTCGATCCCACGCAGATGACCTGGACAGAATCACCCGTTAAGCAAGAGGAAATTGTGATTAAAACTGAACCCGACATCAAACTAGAACCGGCAGATGTTAATGAAGACGTCCGATACAACAGTTCTGACAGTGATTATAGTGATGCCGATGATGAAGATTACGTGTACGAAGAACGTAAAAGCAAAGTGAAAGTAAAAACggaaaagaattcaaaaactAAGGACAGCCGTGACGACAGCGAAGAAgatgaagatgatgatgaagatGATGACTCAGACGACGAGGATGATGATCGAAAACCCACCCGCGGTAACCACGACAATAGAGCTGAAGAGGACTCTTATGTTCCAAAAAACACGAGCTACAAATGTCAAAAGTGCAATAACTATTACTCATCGTCCAGTTCTCTGAAGCGTCACGAACAAACGGTACACACGGCGGATAAGGACAAAATCAGAAAATCGAAGAAGCCAAAACCGAAACCATTCAAATGTGATGTGTGCAAGAAGCCGTTCGAAACGCTTTTCCGGAAAAATCGCCATCTTGTCACACATGAGGAAGGTCGTGTGCGAATCATTGCCTGTCGCCAATGTCCAGAACGGTTCACCGAATACGAAGAGTACCAGCGACACAAGGTGGTGCACAACAAGAGTTTCGAATGCGACATCTGCCATAAAACGTTTACAACAAAATACTTTCTCAAGCTGCACTATCCCATCCATATGGAGACGAAACCATTTCAGTGTGATCGGTGCTCGAGGTCCTTTTCACAGGCGTCCACCTTACGCAGGCACACCTATTTACACGAAGCCGAAAAGCGATTTATGTGCGAAATTTGTGGTAAAAGGTTCCATGCtcaatttttggtgaaaatgcACATTCTGCACACCCATACGAAAGTCCGAAACTTTATGTGTTCACAATGTCCAAAACGGTTTCCGTCGACCACAGCTTTAAACATCCACATCAACGTGCATCACAGCGAAGTGAATCCCTACAAATGTACCGTCTGCGAGAAAACATTCAATCATCCGTCGGCGCTGATGCGACATCGAAAGCTACACACCGGAATTTGTGAATTCGTTTGCGAACACTGCAACAAGCGATTCGTTCGATCAGACCATTTGAAAAAGCACATCGGCGACGTGCACTCGGAAAAGTCGTTCAAATGTGAACTGTGTTCATTCACTTTTAACAAGgcggaaaaactgaaaaaacatGCTCGATCGCATGAGAAACCGGTAGTGAAACGGGTGCTAGAACGCTGCAACGAATGCCATCAACCGTTTACCGACCACAATAAACTGCTGCGCCATCTGGAAATGTTCCACAATCCATCGAATCCGTTCAGGTGCGACATTTGCTTGAAAAGGTTCAGCCAACAGTCAGCACTTGGTCGTCACATGAAACTGCATACCGATCAAAAGAAAAGCTTTAAGTGTAGCGAATGTGAGAAGACATTCTGCCGGTTGGATCACATTAAGACTCACACGTTGACGCTACACAATCCGGATAATCCGTACAAATGCAGTACGTGTAGGCAAACGTTCAGCACGCAACAATCTTTGGATAAGCATATCGTGCGGGCGCATGAAACGGAACGAACGatgttgtgtgaattttgtaacAAAGCCTTCTCAAAACGTTACACACTTCAGCGACACATTCGAAATTTTCATGATTCAGAcagtggtggtggtggtggtggtgttgTAGGCGTTGGTGTGGTTGGTGTTGATGGTGTATTTAGTGTTGCTGATGCAAATTATGTTAATGTTCAACTCAATCATCAGATGATAAgcaattga
Protein Sequence
MPPKAEKKVCMVPACEASSIDYPDRIFVSVPENKKREWLAMVGAESVYIHPTKRFFCCEEHFDVRRDIKDYDFFKLFGGRVKFEDHAYPFKNLGDVPEVIPPTIVTDGKRNTTDIYFPAPLPVTVVEEQPIAESDLKNKSDSNLWKEQRDDEEDIVFVDPLFTSEEPLEAIASNIKVDDEDEFGVSESKFDPTQMTWTESPVKQEEIVIKTEPDIKLEPADVNEDVRYNSSDSDYSDADDEDYVYEERKSKVKVKTEKNSKTKDSRDDSEEDEDDDEDDDSDDEDDDRKPTRGNHDNRAEEDSYVPKNTSYKCQKCNNYYSSSSSLKRHEQTVHTADKDKIRKSKKPKPKPFKCDVCKKPFETLFRKNRHLVTHEEGRVRIIACRQCPERFTEYEEYQRHKVVHNKSFECDICHKTFTTKYFLKLHYPIHMETKPFQCDRCSRSFSQASTLRRHTYLHEAEKRFMCEICGKRFHAQFLVKMHILHTHTKVRNFMCSQCPKRFPSTTALNIHINVHHSEVNPYKCTVCEKTFNHPSALMRHRKLHTGICEFVCEHCNKRFVRSDHLKKHIGDVHSEKSFKCELCSFTFNKAEKLKKHARSHEKPVVKRVLERCNECHQPFTDHNKLLRHLEMFHNPSNPFRCDICLKRFSQQSALGRHMKLHTDQKKSFKCSECEKTFCRLDHIKTHTLTLHNPDNPYKCSTCRQTFSTQQSLDKHIVRAHETERTMLCEFCNKAFSKRYTLQRHIRNFHDSDSGGGGGGVVGVGVVGVDGVFSVADANYVNVQLNHQMISN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-