Bodo010385.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- Gtf3a
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000107.1:572609-575417[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0017 0.084 13.2 0.1 1 23 30 52 30 52 0.97 2 12 0.0016 0.079 13.3 1.2 1 23 140 162 140 162 0.97 3 12 0.00011 0.0058 16.9 1.2 1 23 171 194 171 194 0.98 4 12 2.2e-07 1.1e-05 25.4 1.8 2 23 200 221 199 221 0.97 5 12 4.2e-06 0.00021 21.4 0.3 1 23 229 251 229 251 0.99 6 12 0.0014 0.069 13.5 1.3 2 23 273 294 273 294 0.97 7 12 4.7e-05 0.0024 18.1 0.7 1 23 303 326 303 326 0.98 8 12 2.2e-06 0.00011 22.3 0.1 2 23 332 353 332 353 0.98 9 12 5.5e-07 2.8e-05 24.2 1.2 1 23 359 381 359 381 0.98 10 12 3.3e-06 0.00017 21.7 0.1 2 23 389 410 388 410 0.96 11 12 0.00011 0.0057 16.9 2.2 1 23 416 438 416 438 0.98 12 12 7.9e-05 0.004 17.4 0.3 1 23 444 467 444 467 0.96
Sequence Information
- Coding Sequence
- ATGAACCAATTTACAGTATACGATCCGTTAGACAGTGAAGATCACAAATTCGGTGAAATTTATTGCAATTACGAGGGAAAGTTAACATTCACTTGTGTATTCTGTCCGATCAAATTCAAGGATGCGGCTGAATTCAGCATTCATTACATTGTTCATGTTAAGGAAGTGTTTGAAATTAAAACGGAAACGGAGGTGTGTGTTCTTGAACCGAACGTTGAAATCGATGAACCGCAATTCCAATCAACGGAAATTAAAAGCGAACCATCTAGCGATGCGATTAATGATGACAGCAAAGTGATAACGAAATTGgactttgaaaaagttcaaCCGGAAAATGTTCTCGACCGGAGTATAAAATCGCCAAGAACTTCGTCGAAGACGAATGCGAAAGAAAGTGATAAGAAGTTTGACCACCCACATCGCTGCAACGTTTGTTCACAGGAATTCATATTAAAATCGGCTCTGGATCGACATACCGAGAGTCACGGCATTGGCCTTTTTCCATCCCGATTCGAATGTGATATTTGCGGTTCGAAGGTGAAACTGAAAAAAGATCTGCGGACGCATATGAGGCGGAAACATATCGAAGATAAAATTCCATGTACGATTTGCGGGAAAGTATTTTGCCGGAAGAACTACTTGAGCGAACACATGAAAACGCACGTCAAACCGGAAAATCGGCCTTTCAAATGCGAAATTTGCCGTAAAGGTTTTGTAACGGCTAAAGATGTCGAGGCGCACATGAAGAGACACGATCCGGCTGTACATTTAAATCACGTCAAAAAAGAAAGtgacaaaaaattcgaaaatccgGCCCGTTGTCACATATGCAGTcagcaatttattgtgaaaAAAGCCCTAGATCGCCACATTGAAAGCCACGGCATCGGAATCATTCCGCTGATATATGAGTGTGACATTTGCAATgcaaaaataaaacagaaaaaggaTTTGAGGACTCACATGCAACGGCTGCATAGCGGCCATAAGGCAACCTGCGGAATATGTGGAAAACAATTCgCTCGGTCGAACTATCTCTACGCACACATTCGAATACACGAAAATTACAGACCTCATCAATGTTTCGTTTGCGGAAAAACATTCGTTATGGCCGGTGATCTAACGTCTCACATgcgaaaacacacaaaaacagaaCCAACGATTCCGTGTACCAtttgttggaaaatgtttgaacGCCCCGGACAGCTTTCCGAACATATGCGTCTTCACACCAATGAAAGACCATTTGAGTGCAAAGTTTGTGGTTCCCGATTTCGAACGAAAGGATACTTTAACATTCACAAAACGACCCACTGGATCGGAAGAAACTTCTCTTGTGAGCTGTGCGGTGTTACGTTCAAAAATCCCACCGGTGTTCGGACGCACATGTTTAAAGTACATGGGAAAAATGCGGCCACAATTAGacgacaaaaaaagaaaaacgaaacgtGA
- Protein Sequence
- MNQFTVYDPLDSEDHKFGEIYCNYEGKLTFTCVFCPIKFKDAAEFSIHYIVHVKEVFEIKTETEVCVLEPNVEIDEPQFQSTEIKSEPSSDAINDDSKVITKLDFEKVQPENVLDRSIKSPRTSSKTNAKESDKKFDHPHRCNVCSQEFILKSALDRHTESHGIGLFPSRFECDICGSKVKLKKDLRTHMRRKHIEDKIPCTICGKVFCRKNYLSEHMKTHVKPENRPFKCEICRKGFVTAKDVEAHMKRHDPAVHLNHVKKESDKKFENPARCHICSQQFIVKKALDRHIESHGIGIIPLIYECDICNAKIKQKKDLRTHMQRLHSGHKATCGICGKQFARSNYLYAHIRIHENYRPHQCFVCGKTFVMAGDLTSHMRKHTKTEPTIPCTICWKMFERPGQLSEHMRLHTNERPFECKVCGSRFRTKGYFNIHKTTHWIGRNFSCELCGVTFKNPTGVRTHMFKVHGKNAATIRRQKKKNET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245650;
- 90% Identity
- iTF_00245650;
- 80% Identity
- -