Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: -
Assembly: GCA_016920775.1
Location: JAFDOW010000233.1:1198653-1202034[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.4e-05 0.00069 19.8 2.4 1 23 185 207 185 207 0.98

2 12 0.00012 0.0059 16.9 0.6 1 23 214 236 214 236 0.98

3 12 2.2e-07 1.1e-05 25.4 0.8 1 23 254 276 254 276 0.98

4 12 0.0001 0.0052 17.0 2.1 1 23 283 305 283 305 0.97

5 12 4.7e-05 0.0024 18.1 0.7 1 23 311 333 311 333 0.98

6 12 6.3e-05 0.0032 17.7 5.4 1 23 339 361 339 361 0.98

7 12 3e-06 0.00015 21.8 0.6 1 23 367 389 367 389 0.96

8 12 0.00054 0.027 14.8 1.2 1 23 395 417 395 417 0.98

9 12 1e-05 0.00053 20.2 0.9 1 23 423 445 423 445 0.98

10 12 5.1e-07 2.6e-05 24.3 3.7 1 23 451 473 451 473 0.99

11 12 4.9e-07 2.5e-05 24.3 1.1 1 23 479 501 479 501 0.99

12 12 0.00022 0.011 16.0 1.0 1 23 507 529 507 529 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.4e-05	0.00069	19.8	2.4	1	23	185	207	185	207	0.98
2	12	0.00012	0.0059	16.9	0.6	1	23	214	236	214	236	0.98
3	12	2.2e-07	1.1e-05	25.4	0.8	1	23	254	276	254	276	0.98
4	12	0.0001	0.0052	17.0	2.1	1	23	283	305	283	305	0.97
5	12	4.7e-05	0.0024	18.1	0.7	1	23	311	333	311	333	0.98
6	12	6.3e-05	0.0032	17.7	5.4	1	23	339	361	339	361	0.98
7	12	3e-06	0.00015	21.8	0.6	1	23	367	389	367	389	0.96
8	12	0.00054	0.027	14.8	1.2	1	23	395	417	395	417	0.98
9	12	1e-05	0.00053	20.2	0.9	1	23	423	445	423	445	0.98
10	12	5.1e-07	2.6e-05	24.3	3.7	1	23	451	473	451	473	0.99
11	12	4.9e-07	2.5e-05	24.3	1.1	1	23	479	501	479	501	0.99
12	12	0.00022	0.011	16.0	1.0	1	23	507	529	507	529	0.98

Sequence Information

Coding Sequence: ATGGACGACCATTTAGAAATCGAAATcgacactttcgcttgtcgtgtGTGCCTGGCCAGAAATGTGGAAGTTGCATCATTGTTCACCACATCAATCAATACGATCATACTGTCGGAAATGTATCAAGCTATCGTGCCGATGATCGAGATCAATGATACCTTGCCGCATTCCATATGCACGAATTGTATTGCCAACCTTGTTGTGGCTTATGAGTTTCAATTGCAATCCATCAAGTCCGACACAGACATTCGAATCGCTTTAGGACTAGCAACGAAAGATGTTGACTTAACGACGGATCACATTGTGAGTGACGATGTTACTGTTGAGGTATTATTGGAAGACGATCCAGAAGCAGGTGTTGAGTGTCCAGCATCGCCGAATAATTTCGCTTTAACGGAGGACAAAGGTGATAACGAAGAAATCAGTGAATCGATTGGCCTGGACGAtgatgaaccaatgaatcaCCAACTTGACAAACAGCAATCACCGACGATTGACTTGAAACTGACTGAAAATGCGATGAATCAAAAGAAGACCAAAACCACGTCCGTTCATCAGTGTTCCGAGTGTGATAAGAGTTTCGACAAATTGTCTCGATTGCAACGCCATGCTAAGATTCACAATGCAGATGGAAAGCCGTACAGCTGTGCGACATGTTCGCAACGATTTGCCAGTACGGCCAATCTTCTACGGCATCAAATCAAACACTCGGAAGAATTGGCCCTGAATACGACGACAATCAACAACAGGACGAACAGTTTTGAGTGCACCGAATGTCAGAAAGTGTTCAGCAAACAGGAGTCGTTGGCGTCTCACATGAAAATGCACAAATCCGATCAGAAGGAAtacttttgtgaattttgtcCGAAGAGCTTCACTAAAATGAATAAACTAACGCGACATGCGAAGATACACAGCGATGAAAAGGAACACAAATGCAACATTTGCGAAAAAACGTTTGCGCTGGGCGGACAACTCATCGATCACATGAACAAACACAGAAATGTAAAGCCTCACGTTTGCCCACATTGTAACAAGGGATTCCAACAGTCGTGCACGCTGAAGGATCACATTAGAATTCATACCAGAGATACGCCCTACCTGTGCTCCCAATGTGGTAAAGCATTCAATAATGGCTCAAATTTGCGACAACATTTGCTCAGGCACAGTGGACTCAAACCATTCGAGTGTCCGGAGTGCCCGAGTCGCTTCAGCTGCAAAGGTGGTCTCAAATCTCACATGTCAACCCATTCCGGTGTCAAGCCTTATTTTTGTGAAATCTGTGGCGCCACCTTCACCAAAACGTATTCCTTAGCGAAACACAAACGGATCCATTCTGGTGATAAGCCTTACAAATGTGAGATGTGCGACATGAGATTCAATTCATCCGACCATGTGAAACGTCATATGCGGACCCATTCGGGTGAGAAACCGTACAAGTGCCAGTATTGCGACCGTGCTTTCGCCCAAAGCAACGATCTGGTTAAACACACCCGATCTCACGTCGGCATCAACACGTACAAATGTCCACAATGTCCGTTAGCATTCCGGTTACACGGTGAATTACGCATGCATCGACAGCAACACTTCCTGGAAGGAAAAGGTATGTTAGGAGGCGATCAGTCGACACAGGAAGCGTTCGATGCGAAAAATGTAGATAGTGGATTGTCGCAACAACAGCAACTACAACAATTGGCTACCGTGCCGGAACATTTCGTCGTTAAGATTTAG
Protein Sequence: MDDHLEIEIDTFACRVCLARNVEVASLFTTSINTIILSEMYQAIVPMIEINDTLPHSICTNCIANLVVAYEFQLQSIKSDTDIRIALGLATKDVDLTTDHIVSDDVTVEVLLEDDPEAGVECPASPNNFALTEDKGDNEEISESIGLDDDEPMNHQLDKQQSPTIDLKLTENAMNQKKTKTTSVHQCSECDKSFDKLSRLQRHAKIHNADGKPYSCATCSQRFASTANLLRHQIKHSEELALNTTTINNRTNSFECTECQKVFSKQESLASHMKMHKSDQKEYFCEFCPKSFTKMNKLTRHAKIHSDEKEHKCNICEKTFALGGQLIDHMNKHRNVKPHVCPHCNKGFQQSCTLKDHIRIHTRDTPYLCSQCGKAFNNGSNLRQHLLRHSGLKPFECPECPSRFSCKGGLKSHMSTHSGVKPYFCEICGATFTKTYSLAKHKRIHSGDKPYKCEMCDMRFNSSDHVKRHMRTHSGEKPYKCQYCDRAFAQSNDLVKHTRSHVGINTYKCPQCPLAFRLHGELRMHRQQHFLEGKGMLGGDQSTQEAFDAKNVDSGLSQQQQLQQLATVPEHFVVKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00245649;
90% Identity: iTF_00245649;
80% Identity: -