Bodo014155.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010001452.1:474117-477519[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00051 0.026 14.8 1.5 1 23 144 166 144 166 0.97 2 19 3.1 1.6e+02 2.9 4.1 1 20 174 193 174 195 0.93 3 19 0.00031 0.016 15.5 1.5 1 23 201 223 201 223 0.95 4 19 0.0015 0.076 13.4 1.0 1 23 281 304 281 304 0.97 5 19 0.00023 0.012 15.9 0.7 1 23 327 351 327 351 0.96 6 19 0.11 5.7 7.5 2.6 1 23 357 381 357 381 0.95 7 19 0.0015 0.074 13.4 0.6 1 23 387 411 387 411 0.95 8 19 0.00079 0.04 14.2 6.0 1 23 418 442 418 442 0.97 9 19 9.7e-06 0.00049 20.2 2.4 1 23 448 472 448 472 0.97 10 19 0.001 0.051 13.9 2.4 2 23 479 502 478 502 0.93 11 19 0.003 0.15 12.4 6.0 1 23 508 532 508 532 0.96 12 19 0.0012 0.062 13.6 0.2 1 23 540 564 540 564 0.96 13 19 0.00021 0.01 16.1 2.5 1 23 570 593 570 593 0.96 14 19 1.3e-06 6.8e-05 22.9 0.7 1 23 598 622 598 622 0.96 15 19 0.00087 0.044 14.1 1.5 1 23 628 652 628 652 0.95 16 19 1.3e-06 6.5e-05 23.0 2.4 1 23 658 682 658 682 0.98 17 19 0.0041 0.21 12.0 0.1 1 23 690 715 690 715 0.95 18 19 0.00053 0.027 14.8 4.1 1 23 721 745 721 745 0.96 19 19 2.2e-05 0.0011 19.1 3.4 2 23 752 775 751 775 0.93
Sequence Information
- Coding Sequence
- ATGTTGAGAGTTCACAAAATCGAAGTGAAGGCTGAGCCAGAATTGACAATCATCGATTATGGACGTTTCAATGATTTGGTCGAACCGATGCAAAATTTTGACCGAAGCAAAGAACAGATATTTTGCGCCAACAATGTGaaggaagaaaattttgaacaaaacatTGTGCAAGGTGGTCTGGATGTTAAGAATGTAATCGTTAAGCTTAAACACGAGAAGGAACTGAATATTTTCGATGTATACGAAGATATTCCCGTAGTTTCGCACAAGACGGATCTGCTTGTGGGACAGCTTGATTGTATCCAAAGAAACACTGAGAGTGATTGTACCGTTGTTGGTTCGACTACAACAACATCACCGTCATCAGCAGCAGCAATAGCCCAAGAGTCAGTTTTGTTACAAAATAATGTCGCCGATGACGTGAGGAGTTTCGAGTGTTACCTATGCCATCAAATGTTTTCGAAGATAGAAAATCTGTTGAAGCACATCGAATTACATGGATCCAAGGACAAATACAGCTTCCAATGTTACAGTTGCCGAAAGACTTTCTACGACGGCAGAGATTGTAAGCGCCACATGTTTCTCGGTTGCTTTTCTTCATTTGCTTGCAGAATTTgtggtaaaaattttcaaagtcgcCCCGAACTGCAACAACACCTCACGCATCATATCGAAAAAGGTTTACGCAGAAAAAAGCCAAATCAGATTGCATCCACGACAAGCAACAAATTTCCAATTGTCAAATTGGTTGATTGCTTGAAAATTAAGGATGGAAAGTCCACCAGTGAAGAATCGCACAAGTCTGATACGTCTCAACGCATCGATACCGTCGAACGGGAATTCGAGTGCTACATTTGCAAACAAACGTGTATCAGTCCGGAATCATTATCAGTGCACCTTCTAAAATCCCATCCATCCAATGATCTCAGCACAATTCAAAATCAGATGGACGAACGCACCCACAAGATTGAGAAACGATATGCCTGCCCGCATCCACAGTGTCAACGGAAATACGTGCGCAAATCTGACCTTGCTGTTCACACTCTCACCCATACGAAGGACAAAAGACACGTTTGTAACCATCCCGATTGTAATGCGGCATTTTTCACTGCGAAGGCTCTTTCCATGCATAGACACATACATACCGATCAGATGAAGTATGTATGTGCCCATGAACAGTGTGGAAAGAAATTTAAAGTTCTCGGCTACCTTCGGGAACATGAGAACATCCACAAAACCGATGCTAAACGTCACAAGTGCGAATATGCCAATTGCGATAAAGCGTTTTTTAAGAAGTCTAAATTAACTCGTCATCACCTTACACATATGAGTGCTAGACAGTTCACTTGTAACTATTCGCAGtgcgataaaaaattcaaagataAATCCGCCCTCAATCGTCACTTCGCCACCCATACATCTGACAAAATTCATGCGTGCACATTCAGTCAATGCGAAAAACGATTCACGACGAAAGCTGTTTTAAAATCACATATGGCCAGACATATCAAGGATAAACCGCACACTTGCACCCATCCGGGATGTGGTCAGAAATTCCAAGACTATTCTAACTTTACAAGACATAAGAAGAGACATGTCGTAGATCGACCAAGACTTTTTGTATGTCCTGTTGCACAATGTGGTAAGAGTTTTGAATTGAAACAAGTTTTAAAACGTCATAGTTCCAGCCACTTGCTCGACAGATCATACGAATGTGATCAGTGTGGGAAAAAATTTAGATCGAAACAAGATGTTCGCTATCATAATAAGCGCTCGCACACGACACGGTCACATGTTTGTGATTATGAAGAGTGTGGAAAGTCATTTAAATCGAGGCCTGAACTCAAAAAGCATATGATAGTGCACATGGATCAGAGACCTTATGCGTGTACTCATCCCGAATGTAACAAATCATTCAAAACCGGTCAAATGCTTCGTGTTCACAAAATTACTCATTCACTCGTCAGACAATACTCTTGTTCTCATGAAGATTGTGGAAagacatttaaaacaaaaaatagtttagcATCGCATCAACGGGTTCATTTGGGCGGAAACAGAAAGAAGTACGAATGTACTGATCCAGAATGCGATGGAATGTTTACGAGTAAAGCGTATCTTGCAGTGCACAACCGTTATGTACATTCGGGCGAGAGACCATACATTTGTTCGTATGAGCAATGtaataagaaattttgttcGAGCAGTGACTTTAGAGAGCATGAGAAAACGCACTGCAATGAAAAAACGTATTTGTGTACTTTTCCAGACTGCCATaagaaattcaaatcaaataaaagtTTGCGTTCCCATATTCGCATACACCAATCCTGA
- Protein Sequence
- MLRVHKIEVKAEPELTIIDYGRFNDLVEPMQNFDRSKEQIFCANNVKEENFEQNIVQGGLDVKNVIVKLKHEKELNIFDVYEDIPVVSHKTDLLVGQLDCIQRNTESDCTVVGSTTTTSPSSAAAIAQESVLLQNNVADDVRSFECYLCHQMFSKIENLLKHIELHGSKDKYSFQCYSCRKTFYDGRDCKRHMFLGCFSSFACRICGKNFQSRPELQQHLTHHIEKGLRRKKPNQIASTTSNKFPIVKLVDCLKIKDGKSTSEESHKSDTSQRIDTVEREFECYICKQTCISPESLSVHLLKSHPSNDLSTIQNQMDERTHKIEKRYACPHPQCQRKYVRKSDLAVHTLTHTKDKRHVCNHPDCNAAFFTAKALSMHRHIHTDQMKYVCAHEQCGKKFKVLGYLREHENIHKTDAKRHKCEYANCDKAFFKKSKLTRHHLTHMSARQFTCNYSQCDKKFKDKSALNRHFATHTSDKIHACTFSQCEKRFTTKAVLKSHMARHIKDKPHTCTHPGCGQKFQDYSNFTRHKKRHVVDRPRLFVCPVAQCGKSFELKQVLKRHSSSHLLDRSYECDQCGKKFRSKQDVRYHNKRSHTTRSHVCDYEECGKSFKSRPELKKHMIVHMDQRPYACTHPECNKSFKTGQMLRVHKITHSLVRQYSCSHEDCGKTFKTKNSLASHQRVHLGGNRKKYECTDPECDGMFTSKAYLAVHNRYVHSGERPYICSYEQCNKKFCSSSDFREHEKTHCNEKTYLCTFPDCHKKFKSNKSLRSHIRIHQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -