Bodo003119.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000468.1:1851726-1856450[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.23 12 6.5 3.1 1 19 59 77 59 82 0.82 2 20 0.00053 0.027 14.8 1.2 1 23 88 110 88 110 0.99 3 20 0.0002 0.01 16.1 1.4 1 23 120 142 120 142 0.98 4 20 0.036 1.8 9.0 0.4 1 23 149 172 149 172 0.95 5 20 3.7 1.9e+02 2.7 0.3 1 19 180 198 180 200 0.94 6 20 0.00029 0.015 15.6 0.1 2 23 210 231 209 231 0.95 7 20 1.7e-05 0.00087 19.5 2.1 1 23 239 261 239 261 0.98 8 20 0.0019 0.096 13.0 6.4 1 23 267 290 267 290 0.96 9 20 0.0055 0.28 11.6 1.3 1 23 384 407 384 407 0.91 10 20 0.098 5 7.6 1.3 1 23 446 469 446 469 0.96 11 20 0.00019 0.0095 16.2 0.1 1 23 475 497 475 497 0.97 12 20 0.0066 0.33 11.3 4.5 1 23 502 524 502 524 0.98 13 20 4.9e-05 0.0025 18.0 0.3 2 23 531 552 531 552 0.98 14 20 0.0013 0.065 13.6 6.6 1 23 558 580 558 580 0.98 15 20 0.0001 0.0052 17.0 1.8 1 23 586 608 586 608 0.94 16 20 1.4e-06 7e-05 22.9 3.3 1 23 614 636 614 636 0.99 17 20 3.9e-05 0.002 18.4 2.1 1 23 642 664 642 664 0.99 18 20 7e-06 0.00036 20.7 3.6 1 23 670 692 670 692 0.98 19 20 3.9e-05 0.002 18.3 1.6 1 23 698 720 698 720 0.98 20 20 0.00015 0.0075 16.5 7.9 1 23 726 748 726 748 0.98
Sequence Information
- Coding Sequence
- ATGAACGTTGAATTTATATCAGTAGAAAATATACAGTCCTCGGAATCAGAAACTAAACTAAGATGCACGAGGTCATCAGTGAGAAATCCTCCGGCCGCGACAGATTTACAGAAATCGTCGGAGATTGACactgaacaaaaacaaaaagctgATAATAAAACTAAACAACGAAAGTTCCATTGCCCGGTCTGTAAATTGTCGTTTACAACTAAGAAAGCGTGCGAACTGCACAGTGCAAATCAGCATAACGGTGCGTCAGAGTACAAGTGCGATGTGTGTGAAGCTACCTTTGATCATATCGACAAGCTTTCCAGTCATGTACGAAAGCACGATCGGAAAACTTCCGAGTCCGAACGGTATCAGTGTAATATATGCCTACAGTGCTTCAAAGTCCTCAGCGAGCTTGAGTCTCACGTTAACCAGCATTTTGAATTGGACGTGCGATATAAATGTACCATTTGTGAGAATGCTTTTTTCACTGTTGATCGTCTTGTAAATCATACGACGTCCGTGCACAGCAACAATTCAAACATCTCATTCGACTGCTACGTTTGTGGTAATTTATTCGCGTCGATTGATGAATTTGTCAAACACGACCATGACCACAAAAGGCAATCGGTCTCTCTGAATTGCGCCGAATGTGGGGAGACATTCTCTTCGCTACTTTCGTTGAATGCACACAGAAAAGCGCATACTACACCACGTACACAACCGTATGCATGCCAAAAGTGTACACTCCGATTCTCACGGTCGGAGGATCTGCACAATCATATTCGAGTTCATGATGGAAAGTCGATCTTTTCTTGTGCTTTGTGTGACCGAATGTTTGCTCATTCAAAGAATTTAACGAACCACGTTCACAAATGCCATCGATCCTGTTTTGCCGCTGACGAAATGGATCTTATTGATTTTGTGGTCGAAGCTGAATTAGCATCTCAGATGGATCGAAATAAAATGGAAAGAATCCCAGAGAATGGCGATGTTCAATTGGATGGCGATGTATTTAAATTGAATGTAAGGGAGTTGGTAACGAAGTACATGAACAGAGAAGTTCCTTCATCAGTTCCATCCCTACGGCTGTTATTGCTTCAACATTCACCATACATTCCTGAAAACACAACGAGAAAGCTCacgggattctttcgaaaatatAGTTGTCCGTTATGCGATCTTGTTTTCGTCAAAGCAAAAACTTTAGAGCTTCACTGCAAACGTAACCACTACGGAAACTACACATTAGATCAATTGAAGGATATCCAAACGACCGCAGACCGGAATTCGTCGGAATCATTTGCTAGAGCAATATTGAACACTCGCGTTACCGTACTACCGCAACATGAATGTCCTAGTTGCAATAAAATGCACGAATCACGTCAGGAGTTGATCGAACATTTGAAAGTCGATCACAACGGCAATAGCCCATTCAAATGTGCTGAGTGTGTTGAAACATTCACAACTTCAAACGAATTGGCTGCGCATGTTCTCAACCATCCTGTTAAAAGGCACGAATGCAAATATTGTCGGTTAACATTTATGAACTTGTATTCACTGGGAAAGCATACAAAGAGACACGAAGGTCCGAACACCGAAACTTGTTCGATTTGCAATATTCCGTACAGGGAAAAGAAGGATCTTGTTAAGCACATGCGAATTCATGCAGATGGAAAGCCCCACAAATGTCTGTTCTGCGATAAAAGATTTGCTCAATCCTGCGATCGTCAAAAGCACATGAGGATCCATACAGGTGAACGTCCATATGTGTGTAAAATCTGTGGTAAATCTTTCGCTCACCTTACAAGCATTAAAAAACACAACTATGTCCATACTGGTGAACgagcttttcaATGTACCACATGCGGAAAGAGTTTCCAACACTCCAGTAATCTGGTCGTTCACAATCGAACACATACAGGCGAACGTCCGTACAAATGTAAAATATGCGAGAAAACCTTCTACGCATCTGGTCACTACGTCGACCATATGAAGATTCACATCGGCATCAAGAACTACGAATGCGAGGTGTGCAAAAAGAGTTTCATTCATTTGAGTAGCTTCCAGAAACATAAACGTGTTCACTCAGGCGAAAAACCTTACGTCTGCCAATTTTGCAATCGAGCATTTTCGCAAAGTGGCCACTACAGAGAACACGTTATGATTCACAGTGGCGAAAAACCCCACAAATGCAACATTTGCGGAAAAAGTTTTCGACGTTCTGATGCCCTGCATTGCCACCAAAAAACGCACAAAAAAGAGATTAGTTTGTCGGTGGCTGAGGTGAAAGATGATACCAATGCTGCAATTATGCCAACGTATTCCCTCAGCGAAATAACTTTTGGTGACGATGGAAACCTAAACCAGATTCAATTGACCGATCAGCATCATCAATCGGAATTGATCACTGAGGTCGGCCATAGTGACATCGAATCGATAACGGTTGTTCGAACTCTTCAAAATGATATGGGTGGTGATCAGACCATCAGTACGTTTAgctgtaattttattttgtaa
- Protein Sequence
- MNVEFISVENIQSSESETKLRCTRSSVRNPPAATDLQKSSEIDTEQKQKADNKTKQRKFHCPVCKLSFTTKKACELHSANQHNGASEYKCDVCEATFDHIDKLSSHVRKHDRKTSESERYQCNICLQCFKVLSELESHVNQHFELDVRYKCTICENAFFTVDRLVNHTTSVHSNNSNISFDCYVCGNLFASIDEFVKHDHDHKRQSVSLNCAECGETFSSLLSLNAHRKAHTTPRTQPYACQKCTLRFSRSEDLHNHIRVHDGKSIFSCALCDRMFAHSKNLTNHVHKCHRSCFAADEMDLIDFVVEAELASQMDRNKMERIPENGDVQLDGDVFKLNVRELVTKYMNREVPSSVPSLRLLLLQHSPYIPENTTRKLTGFFRKYSCPLCDLVFVKAKTLELHCKRNHYGNYTLDQLKDIQTTADRNSSESFARAILNTRVTVLPQHECPSCNKMHESRQELIEHLKVDHNGNSPFKCAECVETFTTSNELAAHVLNHPVKRHECKYCRLTFMNLYSLGKHTKRHEGPNTETCSICNIPYREKKDLVKHMRIHADGKPHKCLFCDKRFAQSCDRQKHMRIHTGERPYVCKICGKSFAHLTSIKKHNYVHTGERAFQCTTCGKSFQHSSNLVVHNRTHTGERPYKCKICEKTFYASGHYVDHMKIHIGIKNYECEVCKKSFIHLSSFQKHKRVHSGEKPYVCQFCNRAFSQSGHYREHVMIHSGEKPHKCNICGKSFRRSDALHCHQKTHKKEISLSVAEVKDDTNAAIMPTYSLSEITFGDDGNLNQIQLTDQHHQSELITEVGHSDIESITVVRTLQNDMGGDQTISTFSCNFIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245636;
- 90% Identity
- iTF_00245636;
- 80% Identity
- -