Bodo002310.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bradysia odoriphaga
Gene Symbol
-
Assembly
GCA_016920775.1
Location
JAFDOW010000828.1:998878-1002318[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 6.8e-05 0.0034 17.6 4.3 1 23 128 150 128 150 0.97
2 15 5.5e-05 0.0028 17.9 2.2 1 23 156 178 156 178 0.98
3 15 6.4e-06 0.00032 20.8 0.3 1 23 184 206 184 206 0.98
4 15 1.4e-05 0.0007 19.8 1.5 1 23 212 234 212 234 0.99
5 15 1.8e-08 9.2e-07 28.8 2.5 1 23 282 304 282 304 0.98
6 15 8.3e-05 0.0042 17.3 0.5 1 21 310 330 310 331 0.95
7 15 0.00071 0.036 14.4 1.8 1 23 467 489 467 489 0.97
8 15 9.3e-06 0.00047 20.3 1.8 1 23 495 517 495 517 0.98
9 15 0.00016 0.0081 16.4 1.9 1 23 523 545 523 545 0.99
10 15 5.5e-06 0.00028 21.0 3.6 1 23 572 594 572 594 0.96
11 15 7.8e-06 0.00039 20.5 2.3 1 23 600 622 600 622 0.98
12 15 0.0013 0.065 13.6 5.0 1 23 628 650 628 650 0.98
13 15 9.4e-05 0.0047 17.1 0.7 1 23 656 678 656 678 0.99
14 15 0.0012 0.062 13.6 0.8 1 23 682 705 682 705 0.98
15 15 1.3 63 4.2 0.0 1 23 729 750 729 750 0.89

Sequence Information

Coding Sequence
ATGAATATTCAAGTGCCCTTCATAATAAAAACGGAACAAAACGATGGTTACAATTACGGTGAAATGTATCAGCCACAAATGGTTTTCCCCTATCGGCCATTACATTTACCCTCTGCAGAAACACCCCACGCCGTCCAACCACCCGACGGTGGTGTAGGAGTGGAAAATTATTACTATCAGGGATACAATATGCCATTACAAATCGTACAAAATTCACCACAAACCTATCCATCGGCAACAGTTGCTGATGCAAACAATCAACAAACTGACCAAACATCGACAGATGCATCTCAGTTTGAACAAATGTCAATGGATATCAAACGTAAGTTAGTCGATGCTGGCTACCAGTATCACGAAGATAAGGACAAAGCTCTGAAGCCGTTTTCTTGTGACGTTTGTCATAAATCGTTTGGTCGATTAAGTCACGTACGAAGACATCAATTGCTGCACACGGGAGAGAAACCATTCGAGTGCACTATATGCCATGAAAAGTTTACAAGAATGGAAAACCGAACACGTCACATGGCAATTCACACTGGCGAACGGCGATTTAACTGTGACGTTTGTGGCAAGGGATTCTCGCAGCTAAACCGTTTGAATGTCCATCAGAGAATCCACAGTGGCGAGCGTCCATTTCAGTGCGAAGTGTGCGGGAAGGCTTTCGGTAGGATAGACCATAAAAATAGTCACATGAAGACACACAATTGGGTCAAAATCAAAGAAGAGGCCAGCAAACAAATTGTTGCCGCCAGTGACGCACAACAGTCCGATTCGGCGGTTGATCCTCAAATACCGATAGCGGTCAGTGTCAGAACGGAATCGTCAATTGAACAGGAAAAAGTATTCAAATGTCCGACGTGCGACAAAATGTTTTCCCGGAAGGATCACCTGAACCGACACATTTTAATACATTCCGGCGCGAAGCCATTTGAGTGCGACATTTGTGCAAAGTCTTTTTCCAGGAAAGACAACAAGTACAAACATATGGCCAGCTGTTTGCTCGTTAATTTCGGAATCGTTGTGAAAAGACCTCACATTGGAGTGCCTGGTGCTAATGAATATGGATGTGATCCTCCCGATTTCCGGAGTCTGGAGgagaaaatcaatgaaaaaatgtacgaaattcAATGCGGCAATATCCAACCAATAACGAGCGAGGCTGACGAAAATTTGGACTCCAGTGAAATGGATGCAAAAGATGCCGACGATGTGGAGATTGTGCTCGTTGCGCCTGATATCAACTTGAATACAAATTCGAATGAGGGCGCCTATAACAAGGACGATGCTTCGTCCGGTGAGCCGGATAATGATGGCAAGGAAGATTCGTGTGAAGACCTACTTACTCCAATGAAAACAACCGATGAGAACAAAACGGTAAATAAGTCAGAGGATGGGCTGTTTCGATGTCAGGTCTGTAGCAAAGTGTTTCTGAACCGTAACCATCTGAATCGTCATGCCATCATTCATTCCGGAGTGAAACCATTCAAATGTGATCAGTGCGATAAAGGCTTCTATCGTATGGAGCATTTGCAGCGCCACGTTATCATCCATACCGGTATCAGGCCGTACAAATGCAATTTTTGCGATAAAAGCTTTTTCCAAGTGGGCGATCAAATGAAACATCTCATGACACATATCAACGGGGACATGACCAAGGCGGAAGCGCACGACGAAACGGTTACACCGGATCCAGAGCCTGGTCAGCCGCAAACGTTCGCTTGTGATAAGTGTGACAAGGTCTACACGAAACGAAGCCATCTAAAACGACACTACAGCATCCATTCGTCGCAGAAACCTTTCAAATGCAACATATGCGGCCAAGGTTTTTCGCGGCTTGAACATCAGAAACGACATATGACTATCCACAGCAACCAGAAACGATACGAATGtgaattttgtgataaaaaattcaaccgaCCCGACCATATGCTGTGCCACATCAAGACGCATCGCAATGTGAAACCGTACAAGTGTAACCAGTGTGGTGAACGATTCGAAACATCCAAGGAAAAGGTGGAACATTTAAGGATCCATTCCGGCGCCTATCGATGCGAAATGTGCCATGTTCGCTTCGAATTGTACGTGAATTTGATTGAGCACAGGCGAGTTGTGCATGGCATCCTGCCCAAGAGTGAAATTGAAGGGAAACTGAATGTCAAGGTCAAGGTGAAATCGACCGATCGGTATCCGTGTCCGATTTGTTTTACCGTCTATCTTGTAACTGAGCTGGGCGATCATATTCGAGGTCACATCGACGACACTGCAGATGATAATGTGGAAACAACTACTGATGTCGATACGGATAATGACTTACTGACCAAGGTCAAAGTGGAAGTGGATTATGACGATGATTATGAGGAAACTGCTGCAATTTCGGATAGTATGCTGGACGATGGATATGTAGCAGAATCAGAGCAAATGAACGGTTACGACGAGAATGCAGATTATGGACATGACGGGCTGATTGAAGAGGATGAAGAGGATATTTTACAGCAAGAGGATGACCTTAATTCCAGTTAA
Protein Sequence
MNIQVPFIIKTEQNDGYNYGEMYQPQMVFPYRPLHLPSAETPHAVQPPDGGVGVENYYYQGYNMPLQIVQNSPQTYPSATVADANNQQTDQTSTDASQFEQMSMDIKRKLVDAGYQYHEDKDKALKPFSCDVCHKSFGRLSHVRRHQLLHTGEKPFECTICHEKFTRMENRTRHMAIHTGERRFNCDVCGKGFSQLNRLNVHQRIHSGERPFQCEVCGKAFGRIDHKNSHMKTHNWVKIKEEASKQIVAASDAQQSDSAVDPQIPIAVSVRTESSIEQEKVFKCPTCDKMFSRKDHLNRHILIHSGAKPFECDICAKSFSRKDNKYKHMASCLLVNFGIVVKRPHIGVPGANEYGCDPPDFRSLEEKINEKMYEIQCGNIQPITSEADENLDSSEMDAKDADDVEIVLVAPDINLNTNSNEGAYNKDDASSGEPDNDGKEDSCEDLLTPMKTTDENKTVNKSEDGLFRCQVCSKVFLNRNHLNRHAIIHSGVKPFKCDQCDKGFYRMEHLQRHVIIHTGIRPYKCNFCDKSFFQVGDQMKHLMTHINGDMTKAEAHDETVTPDPEPGQPQTFACDKCDKVYTKRSHLKRHYSIHSSQKPFKCNICGQGFSRLEHQKRHMTIHSNQKRYECEFCDKKFNRPDHMLCHIKTHRNVKPYKCNQCGERFETSKEKVEHLRIHSGAYRCEMCHVRFELYVNLIEHRRVVHGILPKSEIEGKLNVKVKVKSTDRYPCPICFTVYLVTELGDHIRGHIDDTADDNVETTTDVDTDNDLLTKVKVEVDYDDDYEETAAISDSMLDDGYVAESEQMNGYDENADYGHDGLIEEDEEDILQQEDDLNSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00245637;
90% Identity
iTF_00245637;
80% Identity
-