Bodo009163.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010001331.1:1433580-1437954[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00035 0.018 15.4 0.7 1 23 12 34 12 34 0.99 2 19 1.9e-05 0.00096 19.3 1.5 1 23 39 61 39 61 0.98 3 19 5.7e-05 0.0029 17.8 5.6 1 23 68 90 68 90 0.98 4 19 2e-05 0.001 19.3 0.9 1 23 96 118 96 118 0.98 5 19 7.6e-05 0.0038 17.4 5.7 1 23 124 146 124 146 0.99 6 19 2e-05 0.001 19.3 1.3 1 23 152 174 152 174 0.98 7 19 0.0063 0.32 11.4 3.7 1 23 180 202 180 202 0.98 8 19 6.6e-05 0.0033 17.6 0.2 1 23 479 501 479 501 0.98 9 19 3.1 1.6e+02 2.9 1.6 1 21 505 525 505 526 0.92 10 19 0.093 4.7 7.7 2.2 1 23 538 562 538 562 0.97 11 19 4.3e-07 2.2e-05 24.5 1.9 1 23 568 590 568 590 0.98 12 19 3.4e-06 0.00017 21.7 0.3 1 23 596 618 596 618 0.98 13 19 0.0054 0.27 11.6 2.4 1 23 624 646 624 646 0.98 14 19 0.013 0.68 10.4 2.5 1 23 651 673 651 673 0.97 15 19 0.00028 0.014 15.6 3.5 1 23 682 704 682 704 0.99 16 19 7e-05 0.0035 17.5 0.6 1 23 710 732 710 732 0.98 17 19 0.00023 0.012 15.9 3.1 5 23 741 759 738 759 0.97 18 19 0.00013 0.0067 16.7 1.2 1 23 768 790 768 790 0.96 19 19 0.0011 0.058 13.7 3.6 1 23 796 818 796 818 0.99
Sequence Information
- Coding Sequence
- ATGGCTCACAATGTGGTGCATTCGAAGAAAAAGTTTAAGTGTCAATTATGCGATGTTTGGTTTAAAACTAGCGGAAATATGAAGGAGCACATGAAAGTGCATAAAGGACTGGTGTTCAAATGTTCCTATTGCGGTaaagatttcaataaaattggaaaCTTACGACTGCACGAAAAGAGACACACCAAGTCGTTGAAAGAATATCACTGTGATCTCTGTCCAAGaattttctctcAGAAATGCTTACTCAAGTATCACATGAGAACTCACAACGGTGATCGGCCCTTTAAATGCTCAGCGTGTGATTCTGCATTTGCTGACAAAAGCAATTTGAGGAAACACTTCAGAATTCACTCGgGTGAGAAGCCATTTCAATGCGACCTGTGCGATAAGACCTTCAATCAGAAGAGTTCACTAACATGTCACAAGAGAACCCATGTCACTTTCAAGCCCCATGAATGCCAACACTGCGGGAAACGATTCGGTTTAAATGAGGAATTGATTGTACATCTGAGAGTACACGGCGAGAATAGAAAGTTTAGGTGCAGCATCTGTGATGATGAGTTCGTGGAACATTGCTACTTGAAGTCTCACATGCGGATACACGATTTGAAAACAGCTGGAAATAAATCGGTGCAAGTGTTTAAAACGGCTGATATCGACCCGGACGAACCGACTTGTCTCGTATCGGTGAATGGTGatgaaaatatgttggaaaGCATTGTCTTAAAGAAGAGGCAACAGCACAGTAAACGGAAAACACCACCAAAATCATTGGACGTATCATCAACGAAACGATCGACAACCAGAACTAAACGGCGCCCAATCAAAGAATCAACAATTGACGACGATCGAAAGAACAGCTCCATTGAAGAGACAACAGTAGACGGCGTCACAGATTCTGTGTCTCGATGTGAATTTTATGAAGTTTCCCCGTTGCTGGACAACGATGTTaaaactgaaatcaaacaagAACTCAACGGTATTGAAGACACAACCGCTAGCATTCCGTTTATCAGCGTTTCGATCAAAGTGGAACCCGGCGATTTGATGTTCACGGAACAAGGCTATGAGCATGATGACTCTTCCAATCATTCCAATTTCGATGCAGCCGCTCAATCTGTCACTTCTGATTCGGAAGATGAAAAGCCGCTCGTCCAACGTATTGATGCGAAACATAGCTTTAAAGTTCGATCCAGCCACTGTACAAGAAAACCAATGGAACAATTCAAACATATCATCGAATCGGCGTTTCCCGTGGTCCTTGTCGAACGACTCCAGTACCCGGTAATCATGTCAGCTAAGGTTAAAAGTGAGGAAGTTGTACCTAGCGTTCCGCCGAATGAAAGCATCGATACAACAGAAGACAATGCCAAACAAATTCCGGCCACTAAAGATCGATCAGTGTTGAGCAGTGATGAAAGATCGTCTCTGTATAAGTGTTCCTATTGCCCGAAAGAATTGAAAACCTGGGCCAGCCTGATAATGCATGAGCAAATCCATCGTGACACGTTCGACTGTTCAACTTGTCACAGCAAGTGCTCGAATATACTTGAACTGATCAAACATGCCAAAGAGAACCCGAGTTGTTCGCGAAAAAATGACAGCTCCTTCAAATGTACGATCTGCAATAATGGCATCAGCTACCGGAACAAAACTTCGTTCGACTATCATATGACCAAGCATTCGGGTCTCAGACCATTCGTATGCGATGTGTGCAGCAAAAcgTTCCGTTCGAAAGAAACGCTCCGCCAACACATGAACCGTCATGACAATTCCTACAATTACAATTGCGAAGTTTGTGGACGAGGATTTCCCAATAAAAACTCTTTGCAGCAACATCAACTGAGCCATACCGACTCTAAGCCCTTCAAATGTGACGTATGCAACAACTATTTCAAATCGCAGGGACGATTGTACAATCACAAGAAAATCCACATGAAACCGCAGTTCAGTTGCTGTTACTGCAGTCGTCAATTTACGATCGTGGGTAATTTGAAGATTCATGAAATGCGTCACATGAAAAGCGAATTGGTCGACAAATTCAAATGCGAAATATGCGACAAGGAATTCCTTCTGAAGCACGACCTGAGATATCACATGCGCAAACACAACGGCGAAAGACCTTACCCGTGCACCTTGTGTCCATCACGATTTGCCGACATTAGCAACTTGCATAAGCACATAAAGATCCACACAGGTTCCAAGCCATACGTCTGCCACTGTGGCAAATCGTACAATCAGCAGAGTTCGTTGAACACACACAAAAAGACTCATTTGGTGGccacacttgtcgaaaaattcCTGTGCACCCACTGTCCGAAGAAATTTGCTTTAGAAGAGGATTTAACACTTCATCTGCGCAGCCACGGTATCCATAGCATGTTCAAGTGCAGCTTTTGTGATAAGGAGTACGAGTTGTTGAACCATCTGCGCAGCCATCGCAGAATCCATTTGAATTTGCACATGAAGAGAAGTAAATTTTTGTGGCCCgaaaaaatgaacgaaacgATCAACGGATCCGATAGTGTGGAGGCGATGAATGTGCAACTTGAGAGTTAA
- Protein Sequence
- MAHNVVHSKKKFKCQLCDVWFKTSGNMKEHMKVHKGLVFKCSYCGKDFNKIGNLRLHEKRHTKSLKEYHCDLCPRIFSQKCLLKYHMRTHNGDRPFKCSACDSAFADKSNLRKHFRIHSGEKPFQCDLCDKTFNQKSSLTCHKRTHVTFKPHECQHCGKRFGLNEELIVHLRVHGENRKFRCSICDDEFVEHCYLKSHMRIHDLKTAGNKSVQVFKTADIDPDEPTCLVSVNGDENMLESIVLKKRQQHSKRKTPPKSLDVSSTKRSTTRTKRRPIKESTIDDDRKNSSIEETTVDGVTDSVSRCEFYEVSPLLDNDVKTEIKQELNGIEDTTASIPFISVSIKVEPGDLMFTEQGYEHDDSSNHSNFDAAAQSVTSDSEDEKPLVQRIDAKHSFKVRSSHCTRKPMEQFKHIIESAFPVVLVERLQYPVIMSAKVKSEEVVPSVPPNESIDTTEDNAKQIPATKDRSVLSSDERSSLYKCSYCPKELKTWASLIMHEQIHRDTFDCSTCHSKCSNILELIKHAKENPSCSRKNDSSFKCTICNNGISYRNKTSFDYHMTKHSGLRPFVCDVCSKTFRSKETLRQHMNRHDNSYNYNCEVCGRGFPNKNSLQQHQLSHTDSKPFKCDVCNNYFKSQGRLYNHKKIHMKPQFSCCYCSRQFTIVGNLKIHEMRHMKSELVDKFKCEICDKEFLLKHDLRYHMRKHNGERPYPCTLCPSRFADISNLHKHIKIHTGSKPYVCHCGKSYNQQSSLNTHKKTHLVATLVEKFLCTHCPKKFALEEDLTLHLRSHGIHSMFKCSFCDKEYELLNHLRSHRRIHLNLHMKRSKFLWPEKMNETINGSDSVEAMNVQLES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245629;
- 90% Identity
- iTF_00245629;
- 80% Identity
- -