Bodo000244.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010001336.1:1020689-1028481[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00053 0.027 14.8 2.2 1 23 100 122 100 122 0.98 2 17 0.0016 0.079 13.3 1.4 1 23 218 240 218 240 0.98 3 17 1.9e-05 0.00095 19.3 0.3 1 23 246 268 246 268 0.95 4 17 3.4e-05 0.0017 18.5 3.5 1 23 274 296 274 296 0.96 5 17 1.2e-06 6.2e-05 23.1 0.6 2 23 303 324 302 324 0.97 6 17 3e-06 0.00015 21.8 0.0 1 23 330 352 330 352 0.97 7 17 6.1e-05 0.0031 17.7 1.7 1 23 358 380 358 380 0.97 8 17 0.98 50 4.5 1.4 5 23 389 407 386 407 0.93 9 17 3e-06 0.00015 21.9 1.1 1 23 413 435 413 435 0.97 10 17 0.00019 0.0097 16.2 1.4 3 23 443 464 441 464 0.97 11 17 0.00035 0.018 15.4 1.6 3 23 615 635 613 635 0.97 12 17 7.6e-06 0.00038 20.6 0.9 3 23 643 663 641 663 0.96 13 17 2.4e-07 1.2e-05 25.3 0.9 1 23 669 691 669 691 0.98 14 17 0.00017 0.0085 16.3 1.3 1 23 697 719 697 719 0.97 15 17 0.00096 0.049 14.0 1.9 1 23 725 747 725 747 0.97 16 17 7.5e-06 0.00038 20.6 0.9 1 23 753 775 753 775 0.99 17 17 0.0014 0.07 13.5 0.6 1 22 781 802 781 804 0.90
Sequence Information
- Coding Sequence
- ATGTTGGAAGcTTCAATCATCACCCTGGAGAAAGTGTGGCTTAAACCCGAGCCAACCTTCGACGAATACCATGATTCAGCAGACATAATGCATGCCGACAAAATCACACCTCCAATACCAACAGCCAGTTCCACGATCAAGAAAGAGGAATCGGAAATGATGTTCATCAAATCTGAATTTGCATTGGATGATATAGCTGGTACTCAATCATCAATTGTACAGTCAACAAACGATACAAAGAAAAAATCCAACAGCAAAGTTCTTAAGAACCAAGATCTCCAGCCCAGAAGAAAGCCATTTGTTTGCAGCGAATGTGGCGCTAAATTCGCTTGCAGAAACACACTTCAAAACCATCAACGAACCCATACCGCTTCAACCATCGACCTGGAGAAAGTGTGGCTTAAAACCGAGCCTACCTTCGACGAATCCACTGCTTCAGCAATGATTGGCGACAAAATCACACCCCCAATTTCAACAGCCAGTTCTATGATAAAGGAGAAGGAATCGGAAACGGTGTACACCAAAtctaaatttgtattggatGATGTAGCCGCTACTCAGTCATCAATTACACTGTCAACGAACGATACAACTAAAAAATCCAACAGCAAAGTTCTTAAGAACCAAGATCTCCAGCCCAAGGGAATGCGATTTGTTTGCAACGAATGTGGCGCTAGTTTAGCCTGTAAAACCACACTTCAAAACCATCAACGTACCCACACCGGCGAGAAGCCATTTATCTGTGACGAATGTGGAAAGGGCTTTGCGGTAAAGAGTGGTCTTACCCGCCATAAACTGTTCCATTCCGGGATAAAGTCTCACATCTGTTCGGAATGCGGAAAAGGATTCAGTCAGAGCTGTCAATTGAAGTCACATGAATTAACACATACCGGAGTCAAGCACCTGGTGTGCGAGGATTGTGGAGCAAAATTTTCAACGTCATCTAGCTTCCGAATCCATCGACGAACACATACCGGTGAGCGACCCTATGTCTGTCCGGATTGTGGAGAGGGATTTGTTGAGAAAAGAGCTCTCACCAGACACATGCTTGATCACTCTggggaaaaaaaattcgcttGCGCCCAGTGTGACATGCGGTTCTTCAACAAATATTTGTTACAATCGCACCAGAAAACCCACTCGGCACATAAGCCCTTCGTTTGTGAATGTGGCAAAGGATTCTACCACAGGGCCGGTTTAAAGTTTCACAAAGATACACATTTCAATATGAAGCCGCACGTTTGCAATATCTGTGGTAAACGATACTCACAGGGTGGTACATTAAAGAGACATATGGTTACGCACAGTGACGTGAGGCCTTTTGGTTGTGAAGTTTGTGACATGAGATTTACAAAAAGTTTTACCTTGAAGACTCACATGCTGAAGCAGCATGGTCAGCTACCTACGCCTAAACTGAAAAAGCAAATGAAGATGCGAAATCGAGAACTTGCTGTTGAGACAGAGGTAAAACTTCATACTTTCGAGGCGAACGCGGAAAGGGCGGAACCATCAAACATTCAAGCCATAATTCCGTCCCAAAAGGCAAAACAAAACTCGGATCGTCCTCCGACCATCGATGACGGATTTAATGATTTTCATGGAACGCCAGATAAGTCAGAAACGAACTCATTGTTCAGGACCTCAAATGTTGACAGGATCGATAAATTTCACGAGATTTTTGACGATAACACTTGTCTCAAAATCCAACAACCAGAGCAAAATGACGAAATGGAAACCTGTGTAGAACAAATAAAAGTGGAACCggacatttttgaaaatcttaatTGTAATGATGACGAAAATGAGCCAACACTCAAACCAGACAAAGAATTACCTATCGCTTGCGACAAATGCGAccgaaagtttttatttaattcgggTCTGAAAAGACATCAACGAAAGCATAGAGAACGCAGCCAAATAATTTGTGACGAATGTGGCAAAGCGTTCAAGCAACACTATTTGCTCGAATTACATAAACGCTCACACTCCGGAATTAAACCATATAAGTGTGATGAGTGCGGCGCCACCTTCACCCAGAGTTCTAACTTAaacacacacaaattgagtcACAGCAGTCTGAAGCCATTTTCGTGTGATGTGTGCTCCATGAGCTTTTCGAAAAAGGCTGGCCTCAAAACGCATAAGCTAAAACATACGAAGGAGAAACCGTTTGCGTGTGATGTATGTGGTCTGAGATTCACACTGAAGCATCGAGTAAAGCTGCATATGCGTTCACATACTGGTGAGAAGCCCTACACTTGTGAACAATGTGGTGCAAGATTTAGCCTAAAAAGTTACCTGACCACTCACCTGAAAATTCATACCGGTTTGAAGCCATTTTCGTGTGACGAATGCCCATCcaaatttatcacaaaatcCGCATTGAAAGAGCACAAGGGATACTCGCATCGCGGTGTCGACGAGCTTTCACCCCGTAACAGACGTAGGATGCAGAAGCTTGCACAAGGAAAGACATAA
- Protein Sequence
- MLEASIITLEKVWLKPEPTFDEYHDSADIMHADKITPPIPTASSTIKKEESEMMFIKSEFALDDIAGTQSSIVQSTNDTKKKSNSKVLKNQDLQPRRKPFVCSECGAKFACRNTLQNHQRTHTASTIDLEKVWLKTEPTFDESTASAMIGDKITPPISTASSMIKEKESETVYTKSKFVLDDVAATQSSITLSTNDTTKKSNSKVLKNQDLQPKGMRFVCNECGASLACKTTLQNHQRTHTGEKPFICDECGKGFAVKSGLTRHKLFHSGIKSHICSECGKGFSQSCQLKSHELTHTGVKHLVCEDCGAKFSTSSSFRIHRRTHTGERPYVCPDCGEGFVEKRALTRHMLDHSGEKKFACAQCDMRFFNKYLLQSHQKTHSAHKPFVCECGKGFYHRAGLKFHKDTHFNMKPHVCNICGKRYSQGGTLKRHMVTHSDVRPFGCEVCDMRFTKSFTLKTHMLKQHGQLPTPKLKKQMKMRNRELAVETEVKLHTFEANAERAEPSNIQAIIPSQKAKQNSDRPPTIDDGFNDFHGTPDKSETNSLFRTSNVDRIDKFHEIFDDNTCLKIQQPEQNDEMETCVEQIKVEPDIFENLNCNDDENEPTLKPDKELPIACDKCDRKFLFNSGLKRHQRKHRERSQIICDECGKAFKQHYLLELHKRSHSGIKPYKCDECGATFTQSSNLNTHKLSHSSLKPFSCDVCSMSFSKKAGLKTHKLKHTKEKPFACDVCGLRFTLKHRVKLHMRSHTGEKPYTCEQCGARFSLKSYLTTHLKIHTGLKPFSCDECPSKFITKSALKEHKGYSHRGVDELSPRNRRRMQKLAQGKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245623;
- 90% Identity
- -
- 80% Identity
- -