Bodo000284.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bradysia odoriphaga
Gene Symbol
-
Assembly
GCA_016920775.1
Location
JAFDOW010001336.1:1060327-1063348[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3.6e-06 0.00018 21.6 0.2 1 23 96 118 96 118 0.98
2 16 9.3e-05 0.0047 17.2 0.1 1 23 124 146 124 146 0.95
3 16 8.5e-05 0.0043 17.3 4.4 1 23 152 174 152 174 0.97
4 16 5.4e-06 0.00027 21.0 0.3 2 23 181 202 180 202 0.97
5 16 1.6e-06 8e-05 22.7 0.1 1 23 208 230 208 230 0.97
6 16 0.00025 0.013 15.8 1.5 1 23 236 258 236 258 0.97
7 16 0.0089 0.45 10.9 1.2 5 23 267 285 264 285 0.96
8 16 4.2e-06 0.00021 21.4 0.7 1 23 291 313 291 313 0.96
9 16 5.7e-05 0.0029 17.8 1.1 3 23 321 342 319 342 0.97
10 16 0.00037 0.019 15.3 2.5 1 23 510 532 510 532 0.98
11 16 4.1e-06 0.00021 21.4 0.8 3 23 540 560 538 560 0.96
12 16 9.7e-06 0.00049 20.2 2.9 1 23 566 588 566 588 0.98
13 16 0.0017 0.088 13.2 0.6 1 23 594 616 594 616 0.98
14 16 0.00068 0.034 14.4 2.2 1 23 622 644 622 644 0.97
15 16 3.3e-06 0.00017 21.7 0.4 1 23 650 672 650 672 0.99
16 16 0.0014 0.072 13.4 0.5 1 22 678 699 678 701 0.89

Sequence Information

Coding Sequence
ATGTTGGAAGctTCAACCATCACCCTGGAGAAAGTGTGGCTTAAAACCGAGCCTACCTGCGACGAATCAGACATAATTAATGCCGACCAAGACAAACCATCAGTGTCAGCAGTCAGATCTTCAATAAAGACAGAGGAATCGGAAACGGTGTACATCAAATCTGAATTTACATTGGAGGATAAAGCCGGTACTCAGTCATCAATTGTACAGTCAACAAACTATACAATGATAAAACCCAACGGCAAGGTTCTGAAGAGCCAATATATCCAGCCCAAAGCAAAACGATTTGTTTGCAGCGAATGTGGTGCTAGTTTAGCATCTAAAGACACACTTCAAAATCATCAACGAACCCACACCGGTGAGAAGCCCTTTATCTGTGACGAATGTGGAAAGGGCTTTGCGGTAAAGGCCGCTCTTGCCCGCCATAAACTGTTCCATTCCGGGCTCAAGCCTCACATTTGTTCGGAATGCGGAAGAGGATTCAGTCAGAGCTGTCAATTGAAGTCACACAAATTAACACATACCGGAGTCAAGCATCTGGTATGCGAGGACTGTGGAGCAAAGTTTTCAACGTCATCTGGCTTCCGAATCCATCGACGATCGCATACCGGTGAGCGACCCTATGTCTGCTCGGTATGTGGAGAGGGATTCGTTCGGAAAAACGCTCTCACCCGACACATGCTCGATCACTCTggggaaaaaaaattcgcttGCGACCAGTGTGACATGAGATTCTTCGAAAAGAATTTGCTGCAATCGCACCAGAAAACCCACTCGGATCATAAGCCCTTCGTGTGTGAATGTGGCAAAGGATTCTATCACAGGGCCGGGTTAAAGTCACACAAAGATACACATTTGAAAGTGAAGCCGCACGCTTGCAATATCTGCGGTAAACGATTCACGCAAGGAGGCACTTTAAAGATTCATATGGTTACGCATAGTGACGTGAGGCCTTTTGGTTGTGAAGTTTGTGACATGAGATTCACACAAAGTTTCACTTTGAAGACTCACATGCTGAAGCAGCATGGTCAGCTACCAACACCTAAACCGAAAAAGCAGGTGAAGATGCGACAGCGAGTACCTGCTGTTGAGACAGAGATGAAAAGTCATACCAACTATGGATATGAAAACGCGGAAAGGGTGGAATCATCAAACGGTCAAGTCATAAATTTGTCCCAAAAGGCTAAACAAAACTCAGATCATCCTCCAACCATCGATGACGGATTTAATGACTTTCATGGAACGCCAGATAAGTcagaaacaaaatcatttttcttgatCTCAAATGGTGACAATGATGATAAGACTTGTCTTGAAATACCGGAGCAAATTGGCAATGATTATAAGGCTTGCCTCGAAATACCGGAGCAAAATGACGAAATGGATACCAGTGTAGAGCAAATAAAAGTGGAACCAGTGGACATTTTCGAAAATCTGAATGGTAATGATGACGAATGTGAGCCACCACCCAAACaaggcaaaaaaaatcgttcgacaAACAAATCAGATCCATCGGTTGAATTACCCTTCTCTTGCGACAAATGCGACCGAAAGTTTTTATTCAATGCGGGTCTGAAAAGACATCAACGAAAGCATAGAGAACGCACCCAAATAATTTGCGACGAATGTGGCAAAGGCTTCAAGCATAACTATCTACTCGAAATACATAAACGCTCACACTCCGGAATAAAACCATTCAAGTGTGATGAATGCGGCGCCTCCTTCAGTCAGAGATGTAACTTAaacacacacaaattgagtcACAGCAGCCTGAAGCCATTTTCGTGCGATGTGTGCTCCATGAGCTTTTCGAAAAAGGCTATCCTCAAAGCGCATAAGCTAACCCATACGAAGGAGAAACCGTTTGCCTGTGATGTATGCGGTCTAAGATTCAGAATGAAGCATCGAGTAAAGCTACATATGCGTTCACATACTGGTGAGAAGCCCTACACTTGTGAACAATGTGGTGCAAGATTTGGCCAGAAGTCTTACTTGTCCATTCACATGAAAATTCATACGGGTTTGAAGCCATTTGCCTGTGACGAATGTCCCTCCAAGTTTATCTCAAAATCCTCACTGAAAGTGCACAAAGGATACTCTCATCGTGGAGTCGACGAGCTGTCACCCCGTCATCGACGAAGGATGCAGAAGCTTGCACAAGGACATAGCGGCGAAGAACGATTCAAATTTAGTACAAAATGA
Protein Sequence
MLEASTITLEKVWLKTEPTCDESDIINADQDKPSVSAVRSSIKTEESETVYIKSEFTLEDKAGTQSSIVQSTNYTMIKPNGKVLKSQYIQPKAKRFVCSECGASLASKDTLQNHQRTHTGEKPFICDECGKGFAVKAALARHKLFHSGLKPHICSECGRGFSQSCQLKSHKLTHTGVKHLVCEDCGAKFSTSSGFRIHRRSHTGERPYVCSVCGEGFVRKNALTRHMLDHSGEKKFACDQCDMRFFEKNLLQSHQKTHSDHKPFVCECGKGFYHRAGLKSHKDTHLKVKPHACNICGKRFTQGGTLKIHMVTHSDVRPFGCEVCDMRFTQSFTLKTHMLKQHGQLPTPKPKKQVKMRQRVPAVETEMKSHTNYGYENAERVESSNGQVINLSQKAKQNSDHPPTIDDGFNDFHGTPDKSETKSFFLISNGDNDDKTCLEIPEQIGNDYKACLEIPEQNDEMDTSVEQIKVEPVDIFENLNGNDDECEPPPKQGKKNRSTNKSDPSVELPFSCDKCDRKFLFNAGLKRHQRKHRERTQIICDECGKGFKHNYLLEIHKRSHSGIKPFKCDECGASFSQRCNLNTHKLSHSSLKPFSCDVCSMSFSKKAILKAHKLTHTKEKPFACDVCGLRFRMKHRVKLHMRSHTGEKPYTCEQCGARFGQKSYLSIHMKIHTGLKPFACDECPSKFISKSSLKVHKGYSHRGVDELSPRHRRRMQKLAQGHSGEERFKFSTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-