Bodo001439.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bradysia odoriphaga
Gene Symbol
-
Assembly
GCA_016920775.1
Location
JAFDOW010000643.1:339650-357303[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 47 0.16 8.1 7.0 0.1 3 23 56 75 54 75 0.96
2 47 0.0004 0.02 15.2 2.0 1 23 81 104 81 104 0.97
3 47 5.3 2.7e+02 2.2 0.6 1 23 111 136 111 136 0.77
4 47 2.5e-05 0.0013 19.0 0.9 2 23 145 166 144 166 0.96
5 47 0.018 0.93 9.9 0.5 2 23 173 192 172 192 0.93
6 47 7.7e-05 0.0039 17.4 0.1 1 23 198 221 198 221 0.97
7 47 0.00016 0.0079 16.4 0.1 2 23 236 257 235 257 0.95
8 47 1.1e-05 0.00056 20.1 3.6 1 23 262 284 262 284 0.98
9 47 0.31 16 6.1 0.0 2 17 291 306 290 307 0.91
10 47 5.7 2.9e+02 2.1 0.3 3 23 389 408 388 408 0.89
11 47 0.0027 0.14 12.6 1.8 1 23 414 437 414 437 0.97
12 47 0.36 18 5.9 1.7 1 23 444 469 444 469 0.88
13 47 2.7e-06 0.00014 22.0 1.4 2 23 478 499 477 499 0.98
14 47 0.0042 0.21 11.9 0.8 2 23 506 525 505 525 0.94
15 47 0.00016 0.0079 16.5 0.4 1 23 531 554 531 554 0.94
16 47 3.6 1.8e+02 2.7 1.5 3 23 674 693 672 693 0.89
17 47 0.00082 0.041 14.2 4.4 1 23 699 722 699 722 0.97
18 47 0.18 8.9 6.8 0.7 1 23 729 754 729 754 0.94
19 47 0.00043 0.022 15.1 2.1 2 23 765 786 764 786 0.96
20 47 2.6 1.3e+02 3.2 1.3 2 23 793 812 792 812 0.79
21 47 0.00045 0.023 15.0 0.2 1 23 818 841 818 841 0.95
22 47 2.3 1.2e+02 3.3 0.7 1 23 847 872 847 872 0.91
23 47 0.014 0.7 10.3 0.5 1 23 887 910 887 910 0.94
24 47 2.2e-06 0.00011 22.3 0.8 1 23 918 940 918 940 0.98
25 47 0.68 34 5.0 0.1 1 16 971 986 971 987 0.92
26 47 2.1 1.1e+02 3.4 0.1 3 23 1053 1072 1051 1072 0.92
27 47 0.0013 0.066 13.6 1.6 1 23 1078 1101 1078 1101 0.98
28 47 2.3 1.2e+02 3.3 0.2 1 23 1108 1133 1108 1133 0.94
29 47 1.4e-05 0.00071 19.7 1.5 2 23 1144 1165 1143 1165 0.96
30 47 0.016 0.8 10.1 0.8 2 23 1172 1191 1171 1191 0.88
31 47 0.00016 0.0083 16.4 0.2 1 23 1197 1220 1197 1220 0.97
32 47 0.093 4.7 7.7 2.3 1 23 1226 1251 1226 1251 0.92
33 47 0.0032 0.16 12.3 1.1 1 23 1266 1289 1266 1289 0.96
34 47 2.3e-05 0.0012 19.0 0.6 1 23 1297 1319 1297 1319 0.97
35 47 9.2e-05 0.0046 17.2 4.3 1 23 1324 1346 1324 1346 0.96
36 47 0.00023 0.012 15.9 0.6 2 23 1353 1375 1353 1375 0.97
37 47 7 3.5e+02 1.8 0.1 3 23 1476 1495 1475 1495 0.83
38 47 0.0002 0.01 16.1 1.0 1 23 1501 1524 1501 1524 0.98
39 47 0.17 8.7 6.9 0.7 1 23 1531 1556 1531 1556 0.95
40 47 0.00014 0.0072 16.6 3.3 3 23 1568 1588 1566 1588 0.97
41 47 0.24 12 6.4 2.8 2 23 1595 1614 1594 1614 0.94
42 47 0.0003 0.015 15.6 0.7 1 23 1620 1643 1620 1643 0.95
43 47 1.1 57 4.3 0.7 1 23 1648 1673 1648 1673 0.91
44 47 0.014 0.7 10.3 0.3 1 23 1698 1721 1698 1721 0.93
45 47 0.00015 0.0074 16.5 2.7 1 23 1727 1749 1727 1749 0.96
46 47 0.00032 0.016 15.5 5.4 1 23 1754 1776 1754 1776 0.96
47 47 0.00028 0.014 15.6 0.5 2 23 1782 1804 1782 1804 0.97

Sequence Information

Coding Sequence
ATGGAAGCTTTGGGATACAACACCCCCTTCGCATCGCAGAATTCTTTCATTCACGAAGCTCCTCACATTTATCCTGAAGGTGACTTTAGACGTTATTCTCTTGATCAGATAGGTGAACCTTCAGTGTACAAAAGAAGCGAAATAGGCACGCACCATTTGCAGAATTGTGCAATTTGCAATGAAAGCTACGTTGCTGGTGAAATGGATCGACACATGCGGAAGCACTTCAATGGTGAATATTATCAGTGTCATGTCTGTGGTCAAGAATATCGAAACTCGATTCGTCTACAAAAACACGCGAAATCGAATCACATCAACTCAAGAGACGAATTTTTCTGCGATATATGCAAGAAATCGAATGTCTTCCAAACCAAAGCAGGCATCGAGGATCATATGAAGAATAGACATTGCAGACCTTCGATAAACGAACTGAAGTGTCCAACTTGTGGCAAAGAGTTTTTCACGAGAAGCAAATTCACAGCTCATGTGAGAGGACACGACAGACGCAAATGGAAAAAGTGTCCGATTTGCAATGAGAGTTTCGGTAGTTTGACTCGGCATATGAATGGAACTCACCTTAAGATCAGAAACTACATCTGTGACATCTGCGGTTCTGCTTACACACAGTGGACATCGTTGAAGGAGCACATAGAAACCAAACACATGCAGATCCACAAACGTAAAACCGAAAACGCTGCGACTTGGCCATGTGAAAAGTGTGGCAAGGTGTTTGCTTTTAGAAGATTATTGAACGTGCACGTGCAACTACATTCTGGTAAGTCGTATGTTTGCAATGAATGTGGTCAATCCTTTCGTCACAACAAATACTTGGCGAAACATCGCAAACAGCATAGGGCCATCGTGAAGCTAAAGTGCACAATGTGTGAAAAGGAATACGTACAAAAGGACACACTAGCAGCTGAATTCTGTAGTGTTGTTACCAAGCCAGAAGTAATTGAAGAAACGATCACTGGCTTCCATCAACCACTGGCTGAACTTATAGAAAATTCAATATCAGAAATGGAAGCTTTGGGATACAACAACACTTTCGCATCTCAGAATTCTATCATTCACGAAGCTCCTCCCATTTATCCTGAAGGTGATAAGAGAGATGAATCCTCAGTGTACAAGAGAAGCGAAATAGGCACGCACCACTTGCAGAATTGTTTAATTTGCAATGAAAGCTACGTTGTTGGCGATACGGATCGACACATGCGGAAGCACTTTAATGGTGAATATTATCAGTGTCATGTCTGTGGTCAGGAATATCAAAACTCGATTCGTCTACAAAAACACGCAAAATCGAATCACATCAACTCAAGAGACGAATTTTTCTGCGATATATGCAAGAAATCGAATGTCTTCAAAACCAAAGCAAGCATCAAGGAACATATGAAGAATAGACACTGCAGACCATCGAAAAACGATATGAAGTGTTCCACTTGTGGCAAAGAGTTTGACACGCGAAGCAAATTCACAGCTCATATGAGGGTACACGAAAGACGCAATTGGAAAAAGTGTCCGATTTGCAATAAGAGTTTCGGCAGTCTGACTCGGCATATGAATGGCACGCACCTTAAGATCAGAAACCATATCTGTGACATCTGCGGTTCTGCATTCACTCAGTGGACATCGTTGAAGGAGCACATAGAAAACAAACACATGCAGATCCACAAACTTAAGCCTGAAGTTGACTTGGAATTTATTGATGTTGTGGAAAAGAGTGGGAACTTTGTCACGAATACTTGTGAAATCAAACATCAGCAAAAGGACACGCTTACGCTACCAGTTGAATTTGGTGGTATCAATACCAAGCCAGAAGAAGAAGCTTCCGATTTACATAAAACATTCATTGAGCTCATAGAAACTTCGATATTAGAGGGCGAAGCTTCGGAACAACACAGCAATTTCGTAGCGCAGCGTTCATTCTTTCACGAAGCTCCTCTAATTTACTCTGAAGATGGTTATCAGAATACGCCATACACGGCGAACGAGATGTACATACGCCAATCGCAGATTTGTTCAATATGCAATAAAAGTTGCGTTATTGGTAAGATGGATCGACACATGCAACAGCATTTCAATGGAGAATTTTATCAGTGCTATATCTGTGGTCGCGAATATCGACACACACATGATTTGGAAAAACACGCGAAATCGAAGCACATTGCTGCAAGAGACGAATTTTTCTGTGATATATGCAAGAGTGGGAGAGTCTTCGAAACCAAAACAAGCATCGAGGAACATATGAAGAATAGACATTGCAAAGAGCAGATTAAGGAGCAAGGGTTGAACTGTTCTACTTGTAACAaagatttttcgacgcttaaACAATTCAGAGCTCATGTGAAACGACACGATGAAATCAAGCGACAACCTTGTCCGATTTGCAATAAGAACTACAGATGTCTGAGTCGGCATATAAAAGATATTCACTTCAACATCAGAAACCATGTCTGTGATATTTGCGGTTCGGCTTACAAACAGTGGAACACATTAAAGGAGCACATAGAAATCCAACACTCGCCTCATGCAGAATTTTTCTGTGATATTTGCCAAGATGGAAAAGGTTATCGGTCGAAAGGGTACATCAAAAAACACTTTGCTAAAGTACACGTAAAAGCTGGTCAGCGACGAAAAAATGCCAGAAAACCCTTCTACGAATGTAGTTTTTGCAACGTAAAACTTCCGTCCAGATACTCATTAAAGAAGCATGTCTCATTACCGCACAACGATGGAAAACATCCAATTTTTCCTTGCAAAACTTGTGACAAGACGTTCACACTGAAGAGTTCCTTGGCAGCGCACGAAAGAACTCACATATGGCATATTTGCCATGAAACTGGTCAGCCCATCAATCATCCGGACTACCTTAAAAAACATCTCAAACAGAAGAAAGACATGAACAAACACAAATGCACATTGTGTCCAAGGGAATATGCACGAAATTTCGATCTGgtttttgatttccatcaacCATTGACTGAGCTCATAGAAAGCTCAATAGCAGAAACCGAAGCTTTGGGGTACAAGAACACTTTCATATCGCAAAGTTCTTTCTTTCCCGAAGCCCCTCTCATTTATTCTGAAGATGgtTATCAGAACGCTGGTCTGTCATACAAGGCAAACGAGAAATACTTGCGTCAATCGCAGATTTGTTCGATATGTAACGAAAGTTACGTTATTGGCGAAATGGATCGGCACATGCAACAGCATTTCAATAGTGAATCTTTTCGGTGCCATGTCTGTGGTGGGGAATATCGCAGCTTAAGTGGTATACAAAAACACATGAAATCGAAACACTTCACTGTGAGAGACGAATTTTTCTGTGATATATGCAAGAGTGAAATAGTCTTCGAAACAGAAGCAAGCATCGAGGAACATATGAAGAACAAACATTGCAAAGAGCCGATTAAAGAGCAAGTACTGAACTGTTCTACTTGTAACAAAGATTTTGTTACGCCTAAACAATTCAAAGCTCATATGAGACGACACGACAAAAGTATGTGGAAACAGTGTCCGATTTGCAATAAGAGTTACAGTAGTCTGAGTCGGCATATGAATGACAAGCACTTGAACATCAGAAACCATGTCTGCGAGATTTGCGGTTCTGCATACAAACAATGGGTGTCGTTAAAGGAGCACATAGAAACCAACCACACGCCGCACGAAGAATTTTTCTGTGATATTTGCAACAATGGGAAAGATTATCGTTCGAAGGCACACCTCAAAAAGCACTTTGCCAAAGTACATGCGAAAGTTTCTCAGCGCAGAAGAAATTTGTGCAAACCCTTCTACGAATGTCAATTTTGCAACGAAAAACTTTCTTCTCGATACACATTAAAGACGCACCTTGCGGTACGGCACAATGTTGGAGacgattcaaatttttcttgtaatgtGTGTGACAAGACGTTCACATTGAAAAGTTCTTTGGTCGTGCACGCAAAACTACATACTGGAAAGCTGCATATTTGCCGTGAGTGCGGTCAGTCCTTCAATCATCCGAACTACCTCAGAAAACATTTGAACCGACATAAGGACATCAAGAAGCGAAAATGCACAATGTGCGAAAAGGAATATGTGCAAAATGTTGATCTGAGACTGCACATGAAGAAAGTGCATGGGGTCATTGTACCAACAAATAATAGCTGTGAAATCGTACATCAGCAAATGGACACCCTAGCAGTTGATATAAATATCAAGCCAGAAGTAAGTGAAGAAACGATCACTGACTTCCATCAACCATTAACTGAGCTCATAGAAAATTCGATATCAGAAATGGAAGCTTTGGGATACAACATTTCCGTATCGCAGAGTTCGTTCAATCATGAAGTTCCTCTTATTCATCCTAAATATGGTGATCAGAGAGATGAACCTTTAGTGCACAAGGCAAGCGAAATAGGGGCGGATCAATCGCAGATTTGTTCAATTTGCAATGAAAGCTACGTTGTTGGTGAAATGGATCGTCACTTGCAACAGCATTTCAATGGCGAATTTTACCAGTGCAGTGTCTGTGGTCGGGAGTACCGGAATTTCATTGGTCTACAAAAGCACACGAAATCGAACCACGTCACTGTAGGAGACGAATTTTTCTGTGATATCTGTAAAGTTAGCAGAAATTTCGAAACCAAAGCAAACATCGAGGAACATATGAAGCAAAGGCATTGCAGCGATCCGATAAAGCAGCCTGTGATGAACTGTTCTACTTGTAACAAAGAATTTTTCACGAGAAAACAATTCACTGCTCATATGAGACGACACGACAGAAGCAAATGGAAATCGTGTCCGATCTGCCATAAGAAGTACGATAATGTGAAACGCCATATGAATAGCAAGCACTTCAACATCAAAAACCATATCTGTGAAACTTGCGGTTCTGCATTCAAACAATGGACATCGTTGAAGGAGCACATAGAATCCAGACACACTTCGCAAGAGTTTTTCtgtgaaatttgccaaaatGGAAAAGGTTATCGGGCGAAAGAATACCTGAAAAGACACTTTGCCAAAGTACACACCAAAGGACATACCAAAGTACCGGCCAAAGTTTACCCACGAAAATATATCAGCAAACCCTTGTTGCCGTTCTACGAGTGTAATTCTTGCAACGAAAAACTTCCATCGAGATACGCATTAAGAAAGCATGTCGCATTACGGCATCGAAACAATTCACATTTTTGTTGTAATATGTGTGACAAGACGTTCACATTAAAAAGTTCCTTGGCCGTGCACGAAAAACTACATGCTGGAAAGCTGCATATTTGCCATGAATGTGGTCAGTCTTTCAATCATGAGAACTATCTGACAAAACATCTTGCTCGACACAAAAATAAGAAGCGAAAATGCACAATGTGCGAAAAGGAGTATGTGCAAAATGTCGATCTGAGACTGCACATGAATAAAGTGCATGGTGTCGTTTTACCAATCGAAAAGAACTCTGAAACATTGTAA
Protein Sequence
MEALGYNTPFASQNSFIHEAPHIYPEGDFRRYSLDQIGEPSVYKRSEIGTHHLQNCAICNESYVAGEMDRHMRKHFNGEYYQCHVCGQEYRNSIRLQKHAKSNHINSRDEFFCDICKKSNVFQTKAGIEDHMKNRHCRPSINELKCPTCGKEFFTRSKFTAHVRGHDRRKWKKCPICNESFGSLTRHMNGTHLKIRNYICDICGSAYTQWTSLKEHIETKHMQIHKRKTENAATWPCEKCGKVFAFRRLLNVHVQLHSGKSYVCNECGQSFRHNKYLAKHRKQHRAIVKLKCTMCEKEYVQKDTLAAEFCSVVTKPEVIEETITGFHQPLAELIENSISEMEALGYNNTFASQNSIIHEAPPIYPEGDKRDESSVYKRSEIGTHHLQNCLICNESYVVGDTDRHMRKHFNGEYYQCHVCGQEYQNSIRLQKHAKSNHINSRDEFFCDICKKSNVFKTKASIKEHMKNRHCRPSKNDMKCSTCGKEFDTRSKFTAHMRVHERRNWKKCPICNKSFGSLTRHMNGTHLKIRNHICDICGSAFTQWTSLKEHIENKHMQIHKLKPEVDLEFIDVVEKSGNFVTNTCEIKHQQKDTLTLPVEFGGINTKPEEEASDLHKTFIELIETSILEGEASEQHSNFVAQRSFFHEAPLIYSEDGYQNTPYTANEMYIRQSQICSICNKSCVIGKMDRHMQQHFNGEFYQCYICGREYRHTHDLEKHAKSKHIAARDEFFCDICKSGRVFETKTSIEEHMKNRHCKEQIKEQGLNCSTCNKDFSTLKQFRAHVKRHDEIKRQPCPICNKNYRCLSRHIKDIHFNIRNHVCDICGSAYKQWNTLKEHIEIQHSPHAEFFCDICQDGKGYRSKGYIKKHFAKVHVKAGQRRKNARKPFYECSFCNVKLPSRYSLKKHVSLPHNDGKHPIFPCKTCDKTFTLKSSLAAHERTHIWHICHETGQPINHPDYLKKHLKQKKDMNKHKCTLCPREYARNFDLVFDFHQPLTELIESSIAETEALGYKNTFISQSSFFPEAPLIYSEDGYQNAGLSYKANEKYLRQSQICSICNESYVIGEMDRHMQQHFNSESFRCHVCGGEYRSLSGIQKHMKSKHFTVRDEFFCDICKSEIVFETEASIEEHMKNKHCKEPIKEQVLNCSTCNKDFVTPKQFKAHMRRHDKSMWKQCPICNKSYSSLSRHMNDKHLNIRNHVCEICGSAYKQWVSLKEHIETNHTPHEEFFCDICNNGKDYRSKAHLKKHFAKVHAKVSQRRRNLCKPFYECQFCNEKLSSRYTLKTHLAVRHNVGDDSNFSCNVCDKTFTLKSSLVVHAKLHTGKLHICRECGQSFNHPNYLRKHLNRHKDIKKRKCTMCEKEYVQNVDLRLHMKKVHGVIVPTNNSCEIVHQQMDTLAVDINIKPEVSEETITDFHQPLTELIENSISEMEALGYNISVSQSSFNHEVPLIHPKYGDQRDEPLVHKASEIGADQSQICSICNESYVVGEMDRHLQQHFNGEFYQCSVCGREYRNFIGLQKHTKSNHVTVGDEFFCDICKVSRNFETKANIEEHMKQRHCSDPIKQPVMNCSTCNKEFFTRKQFTAHMRRHDRSKWKSCPICHKKYDNVKRHMNSKHFNIKNHICETCGSAFKQWTSLKEHIESRHTSQEFFCEICQNGKGYRAKEYLKRHFAKVHTKGHTKVPAKVYPRKYISKPLLPFYECNSCNEKLPSRYALRKHVALRHRNNSHFCCNMCDKTFTLKSSLAVHEKLHAGKLHICHECGQSFNHENYLTKHLARHKNKKRKCTMCEKEYVQNVDLRLHMNKVHGVVLPIEKNSETL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-