Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.025 37 4.3 0.1 13 22 5 14 2 29 0.80

2 7 1.3 1.9e+03 -1.2 0.1 18 25 75 82 74 90 0.84

3 7 0.00023 0.34 10.8 2.5 15 40 189 211 182 214 0.88

4 7 0.0002 0.29 11.0 1.1 18 41 220 240 218 243 0.91

5 7 0.028 40 4.2 0.4 17 38 247 265 240 270 0.75

6 7 0.12 1.8e+02 2.1 0.9 4 29 263 287 260 293 0.75

7 7 3.6e-05 0.052 13.4 2.2 11 43 298 326 288 327 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.025	37	4.3	0.1	13	22	5	14	2	29	0.80
2	7	1.3	1.9e+03	-1.2	0.1	18	25	75	82	74	90	0.84
3	7	0.00023	0.34	10.8	2.5	15	40	189	211	182	214	0.88
4	7	0.0002	0.29	11.0	1.1	18	41	220	240	218	243	0.91
5	7	0.028	40	4.2	0.4	17	38	247	265	240	270	0.75
6	7	0.12	1.8e+02	2.1	0.9	4	29	263	287	260	293	0.75
7	7	3.6e-05	0.052	13.4	2.2	11	43	298	326	288	327	0.85

Coding Sequence: atggattgtttggatttaagCAAAGTAAAATGCCGTATTTGCATCACTGGCGACGAACTTAGTGGTAGATTGtccaatttatttacaaaaaccaTTAACGAAAGTGCATCAGAAGCAACTAAATTAATTGATGACGAATACGTCTTGAATATGTCGTTTAGCGAAGCTTTGGTCTCGTTTACTTGTATACAGTTACAACAGAATTATGGCCTGCCCGAGACAATTTGCCGGAAATGTGAATTCCAACTGATCGATACGATTAGCTTCATTCACCGTACCAAAGATACTCAACAGATTTTAAATTCTTGTGCTAGTATCAGTGAAAATACCAAAGTAGAAACAGAAGAGGTTGATTTAAGTGAAGACTCAACATATTTGATTGAAGTGTTaaatgatgaagaagaagaagaagttttgGTTCAAGAGGAATATAGTGAAAAAGTGTCTGAATCGAACAATGACAAAGGTAGTTACTCTGACACTGAAGATGcagtttcttttttgaaaaatgtcaaacgAGACGATGTGGTTTCCGATACAGCCAAAACGTTCAAAATGGTTAGGAAAAACCATTCGTGCAACTATTGCAAGAAgagatttttgagaaaatcaaATTTAGTCGACCATTTGAGACTTCATGCTAATGTTCGTCCATTTGAATGTACTTATTGCAAGAAGTCGTTTGTACAGTCTGGCAACTTAAAATCACATCTGCGTACTCACACAAAGGAGcgTCCGTTTCAATGCTTGTTATGTCCTAAGAGTTACAGCCAATCCAGTGCATTAAAAGTGCACTACCGCACCCATACAAATGAGAGAAACTATGGATGTGATGTCTGTTCGAAGAATTTTACAAATGCCAGTGACTTAACGAAACATAAACGAATTCATGATCCGGACTCCAAAATTGCCTGTGAATATTGCGATAAAAAATTTGCTCAGAGAGTTAACTACCGGAATCATTTACGCAGTAATCATGCGATACACGATGTACCAGCTAAGGCGTCTAAGACAATATCGCCTACAAGACCTCCTATGATAAGCGAGCCACTTCTTCCTGTCAAAAAGTAA
Protein Sequence: MDCLDLSKVKCRICITGDELSGRLSNLFTKTINESASEATKLIDDEYVLNMSFSEALVSFTCIQLQQNYGLPETICRKCEFQLIDTISFIHRTKDTQQILNSCASISENTKVETEEVDLSEDSTYLIEVLNDEEEEEVLVQEEYSEKVSESNNDKGSYSDTEDAVSFLKNVKRDDVVSDTAKTFKMVRKNHSCNYCKKRFLRKSNLVDHLRLHANVRPFECTYCKKSFVQSGNLKSHLRTHTKERPFQCLLCPKSYSQSSALKVHYRTHTNERNYGCDVCSKNFTNASDLTKHKRIHDPDSKIACEYCDKKFAQRVNYRNHLRSNHAIHDVPAKASKTISPTRPPMISEPLLPVKK

Sequence clustering based on sequence similarity using MMseqs2