Bodo009669.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- bab1
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000956.1:230656-269437[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-17 9.5e-14 50.7 0.0 1 43 379 422 379 424 0.95 2 2 9 1.6e+04 -4.8 3.1 6 23 520 539 519 541 0.68
Sequence Information
- Coding Sequence
- ATGTCCGAAACGCCGCCACCAAAATCTGTAACTCCAGTTACCACTCCGAATACCGATCAACCAAGGTCGACAAGCCCACCATCGAATTCGCCCATTCAAAACACTTCGCAAGCGAATGTTTCACCAAAAGAACATCAACAGTCGCAACAGGGTCAATCGTCGACGCTCTCGTCAACGCCGTCAAATCAACCGAATTCGTCACAACAGTTCTGTCTGAGATGGAACAATTACCAAACCAATTTGACTAGCGTATTCGATCAGCTGTTACAGAATGAGTCATTCGTTGATGTGACCCTGGCTTGTGATGGCCATTCGATAAAAGCCCATAAAATGGTGCTGTCCGCCTGCAGTCCCTACTTCCAGAGCTTATTTTTCGATAATCCGTGCCAGCACCCGATCATCATTATGAGGGATGTTAAATGGCCGGAATTGAAAGCTGCGGTTGAATTTATGTACAAAGGCGAGATAAATGTAAGTCAAGATCAGATCGGCCCACTTCTACGAGTGGCTGAAATGCTAAAAATTCGAGGACTGGCCGATGTAAACGGCAATGATCAAGAATTGGCTACGCCTCACCAGAGCACAGTATTACCGCAAATTGCGAGCGTCTCAAAAAAGCAAAGACTAACGTCCAAGGATTGGGATAGCGTAAGCGGTAGCAATGTAGACGTAGCACCCAGTACACGGCATCGAAAACGCCGATGGCCATCAACCGAAAATAGTAGTACAGCAGGCAGTCCACCCGTTATACCGTCAACAACGCCAGACAATATGGATGCACAGTCACCAATTCCACCAAATTCAATTTCGTCAATATCTCATCCACCGTCAACACCAACACCGATACCACCGTTTCCCATTCCATCGTCCATTGACGGCATGGGCCTATCGTCGTTGGGAATGACTCATAATGATGACATGGAAATAAAGCCAGGAATAGCTGAGATGATTCGCGAAGAGGAAAGAgCAAAACTAATGGAAAATTCACATGCTTGGCTTGGTGCATCAACATCTGCTTCCATAGCCGACAGCTACCAATACCAATTACAGTCAATGTGGCAAAAATGCTGGAATACAAATCAAAATCTCATACATCATCTGCGATTTCGCGAACGGGGTCCATTGAAATCGTGGCGACCGGAAACTATGGCCGAGGCAATATTTAGCGTTCTCAAAGATGGTCTATCATTATCACAAGCGGCTCGAAAGTACGACATTCCATATCCAACATTTgttttatatgcaaatcgtGTGCACAATATGCTGGGACCGTCGATAGATGGTGGTACTGATTTGCGGCCCAAAGGTCGCGGAAGACCACAGAGAATTTTATTGGGAATATGGCCCGATGAACATATTAAAGGAGTGATAAAGACTGTTGTTTTTCGTGATGCTAAAGAGTTCAAAGATGATGGAATGCATCTGAATTATGGACGCCATTCGCCGGTTTATCCGTTTCCGTCGGAAGGTCAATTGGGCTTTCCTGGGTCACAATGTTCAAACGGTCCTAACTCACAGACACCAGTTTCTGGCACCGAATCTCTGTCACCGGAAGCTGCAGCAGCCGTTGCTGCCGTCGTAGGCCTACGCCAACAAATGCAAATGGCAGCAGCAGCACATCACACCGAAAATTTCAATCTTCCAGCTCATTGTGCAAACATCCATTCGAACAATGGTGGTTCGGCTGGTTCAATGCCAATGCCAAAACTGGGATCACCAGCTGCATCTGGACAAATGGGTGGAAATAATGGAGGAAGCGGTGTACAAATTCCAAGATTAGCATCGCCTGCAATACCAGGTTTATCGAACAACATCCCACACAGTTTAGCCGGCATACCGGGATTGCATATAATGCAAAGTATGATGTCTGGTCAACCTAGTCAAAGTGGTGTTACCATATCGCCGGCACATCACGGTAGTTCAAACTCGTTACATTCGTCTTCAATGAATCAGGGCCACTCTAATTCGCACGGACATCATTCAACATCAACGACAACTCTAAACAGCGGAAGTTTGAATATTTCACGAATAACACCACCAGCAAATTCAGCCCATGATTTACGTATGACCAGTTCTGACGATGAAAATCAAATGCATTCACCGCTGGATATTGAACTGGAATCTGGCGTTAATTTGGCTGTAAGTGGTATGGCATATAAATCGTCTCGAAGTTATTCATCGCCCAGGCCTGAACACATTTTTGCCGACgaattaaatgattttgttaATGCACCGCGATCGTGTCCGTCGCGTTTGAGTGGATTTAAGGAACCGGCTGGTGGTATTAAATTAGAACCGATGACCGAGTGTAGGGGTGAGTGA
- Protein Sequence
- MSETPPPKSVTPVTTPNTDQPRSTSPPSNSPIQNTSQANVSPKEHQQSQQGQSSTLSSTPSNQPNSSQQFCLRWNNYQTNLTSVFDQLLQNESFVDVTLACDGHSIKAHKMVLSACSPYFQSLFFDNPCQHPIIIMRDVKWPELKAAVEFMYKGEINVSQDQIGPLLRVAEMLKIRGLADVNGNDQELATPHQSTVLPQIASVSKKQRLTSKDWDSVSGSNVDVAPSTRHRKRRWPSTENSSTAGSPPVIPSTTPDNMDAQSPIPPNSISSISHPPSTPTPIPPFPIPSSIDGMGLSSLGMTHNDDMEIKPGIAEMIREEERAKLMENSHAWLGASTSASIADSYQYQLQSMWQKCWNTNQNLIHHLRFRERGPLKSWRPETMAEAIFSVLKDGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKEFKDDGMHLNYGRHSPVYPFPSEGQLGFPGSQCSNGPNSQTPVSGTESLSPEAAAAVAAVVGLRQQMQMAAAAHHTENFNLPAHCANIHSNNGGSAGSMPMPKLGSPAASGQMGGNNGGSGVQIPRLASPAIPGLSNNIPHSLAGIPGLHIMQSMMSGQPSQSGVTISPAHHGSSNSLHSSSMNQGHSNSHGHHSTSTTTLNSGSLNISRITPPANSAHDLRMTSSDDENQMHSPLDIELESGVNLAVSGMAYKSSRSYSSPRPEHIFADELNDFVNAPRSCPSRLSGFKEPAGGIKLEPMTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245323;
- 90% Identity
- iTF_00245323;
- 80% Identity
- iTF_00246419;