Bodo006586.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010001451.1:128463-130190[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2e-05 0.035 13.7 0.0 2 35 257 290 256 299 0.83 2 4 2.8e-11 4.9e-08 32.4 0.1 3 44 307 348 305 349 0.86 3 4 0.03 53 3.5 0.0 23 35 374 386 373 390 0.88 4 4 6.3e-12 1.1e-08 34.5 0.0 5 41 416 451 414 454 0.91
Sequence Information
- Coding Sequence
- atgGAATACTATCAAGAAATTAAATGGCACGATCACGCCAGACACATAACAAAtacacagaaaaatatttacctCACTTCTGCTTATTCGGACGTGATAATTTGTGCAGGCGAAAAACGGGCTAGAGCTCACCGGCTAGTTTTAAGTCTATGCAGCGACTTGCTGTACAATATATTCAAGGAATATCCGATAACCGAGACAGCCACTATCATCCTACCTTCTGACCTGAACAGTCAGGTCGTAGATAGCTTGATATCTTTTATGTATACTGGAGAAGTGTTCCTTGAAAATGATCTGCTGGGTGAGTTTCTGCACGCCTGTAAGCTGCTTAAACTTAAAGGTTCAATACAGATAAACGACCACGACTCGACGATGGAATATTCAATGGAAGACGCTACAAGCCCGTTGCAATCAGATAAACTGGATACGTACGACAGTCAAATAATTATGCAAGAAGAGTACATTGTCGAAAATCAAAACGACGATGGCGTCGAAAATGCTGATGAAAGTTTCATTGAATCCTTAATTACGGTAGCACCGACGACGGTACCAGATGACGATCAATCAAATGCAATTGACTACCAATCTTGTTACGATATCGACGACACGGGATGCGTggaagaaaaatatgaaattgacAATGAATCGGGCGGGGAATTCGAAGAGTTTGACGAAATGGAGGAGTTCGACGTTGAATTAACTACGGATAACAGCGGCATTCCTGatcaaaacgaaaatgattGGAAAAAGAAACCGGCTCGATATTCAGAGACAGCACTGCTTGAAGCGTTCAATGATCTGGCTAACGGAGCAACAATTATGGACACCAGCGTCAAGTATAATATTCCACGGTCCACATTGTACTGCAAAATTCGTTCAAATACAAAATACTCGTATCTGTATCGGTCAATTCGAGAATCCGCAATCAAAGAAGCTACAAACGCTGTGGTTTACAACAAATTGAGCCTTCAACAAGCAGCTAGCCAGTTCGGTATTTCTAAGACAGTTTTGTGGCGAAAATTGCGACAGTCCAGCGAATACAAACCCGAAGATAGGAGTCATGCTTGCCGTGAGCAAGCGATCAAAGCGATTGAAGATGGTGAAAAGCTGTTAAACGTatccaaaaaatacaaaattccgATTTCCACACTGCACCGTGACAAGATTAAATTGCTCGAACAGGGCAGGCTGCCAAAACACTGCACAGTTGTGAAGCGCGAAGTGGGACCTGAATTTAAGAAAAGAATTGAAGCCGCATTGGAGTCGTGCAGAAATGGAATGACACAGAAGATGGCATCGCAACTACACAATGTTCCTAAAACGACCATATGGCGTTATATGAACTCGAAAACGGGGAAAAActga
- Protein Sequence
- MEYYQEIKWHDHARHITNTQKNIYLTSAYSDVIICAGEKRARAHRLVLSLCSDLLYNIFKEYPITETATIILPSDLNSQVVDSLISFMYTGEVFLENDLLGEFLHACKLLKLKGSIQINDHDSTMEYSMEDATSPLQSDKLDTYDSQIIMQEEYIVENQNDDGVENADESFIESLITVAPTTVPDDDQSNAIDYQSCYDIDDTGCVEEKYEIDNESGGEFEEFDEMEEFDVELTTDNSGIPDQNENDWKKKPARYSETALLEAFNDLANGATIMDTSVKYNIPRSTLYCKIRSNTKYSYLYRSIRESAIKEATNAVVYNKLSLQQAASQFGISKTVLWRKLRQSSEYKPEDRSHACREQAIKAIEDGEKLLNVSKKYKIPISTLHRDKIKLLEQGRLPKHCTVVKREVGPEFKKRIEAALESCRNGMTQKMASQLHNVPKTTIWRYMNSKTGKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245570;
- 90% Identity
- iTF_00245570;
- 80% Identity
- iTF_00246477;