Bcop004611.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NC:6462517-6471868[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.096 4.1 7.9 1.3 1 19 3 21 3 23 0.87 2 21 4.8e-05 0.0021 18.3 0.4 2 23 37 58 36 58 0.96 3 21 0.1 4.4 7.8 1.0 2 23 116 137 115 137 0.91 4 21 0.11 4.9 7.7 3.9 1 23 209 231 209 231 0.92 5 21 0.019 0.82 10.1 1.4 1 23 307 329 307 329 0.93 6 21 0.12 5.4 7.5 1.3 1 23 335 357 335 357 0.97 7 21 0.012 0.51 10.8 0.3 2 23 363 384 362 384 0.93 8 21 2.4 1e+02 3.5 1.1 3 19 397 413 396 417 0.92 9 21 0.00011 0.0047 17.2 1.5 2 23 450 471 449 471 0.97 10 21 0.026 1.1 9.7 1.1 2 23 477 498 476 498 0.95 11 21 0.00075 0.032 14.5 0.4 1 23 532 554 532 554 0.97 12 21 2.6 1.1e+02 3.4 0.8 2 17 560 575 559 581 0.81 13 21 0.95 41 4.8 0.4 2 23 633 654 633 654 0.97 14 21 10 4.3e+02 1.6 0.2 2 23 720 741 719 741 0.89 15 21 0.033 1.4 9.4 1.4 2 23 747 768 747 768 0.96 16 21 0.0048 0.21 12.0 3.1 1 23 779 801 779 801 0.98 17 21 0.0097 0.42 11.0 0.3 2 23 807 828 806 828 0.96 18 21 7.5 3.2e+02 1.9 1.1 2 23 862 882 861 882 0.88 19 21 0.02 0.87 10.0 1.0 1 23 924 946 924 946 0.99 20 21 0.062 2.7 8.5 0.5 2 23 951 972 950 972 0.94 21 21 0.0013 0.056 13.8 0.2 1 23 1066 1088 1066 1088 0.98
Sequence Information
- Coding Sequence
- atgaaattttattgcaaaatttgcaataaaatttttaagaaatttgttcTTTTTGAGGGACATTTTGACTTTAGTGATGAATGTAGAGACAAACAGAAATCGTTCATCGAGTGTTATATATGTAACAAAAACTTTCGTACCTCGGCTGCCTTAAAATATCATATCCAGCAGCATACAATCAAACGTGCCAAAAATGTGACCTCAATGAAAAAGCCACAAGTGGCAAAAATAGTTCGAAAACCGGTGataccaaaaattacgttgAAAAAGCAATGGAATTTCAAAGTTGAACCACACGGCGTTGGTGTGGACGCGAAAAATGTGGTGCCCAAAAGTCCACAGCTCGAATGCAAAATTTGCGGAAACAAATTTCAGAACCTTCTCCATTTGGCGCAACATTCGACAGAACATGAAAAGAAAGAAGGACACGCTAGTAGCCCTCAAACAGTACAAGAAAATGGAAAGAGAAAGTCAGAGGACATTGAGAGCGTAACGAGTGCACCAATAACGACAACTAAGTCAAGTGTAAAATTGCATCGCAATCAGTGTAGCGTATGCAAAATTGTTCTTAGGCATGGTGGTGCCCGGTTAGTCAGACACATGCAGATTCACGTTGACGGGAAACATAAATGCAACGTTTgcaacataaaattttcacaagtTTCACTGTTCTGGcataaaaaatactttcatcaaaaacaaaatcagtCGGAATTGTTGGCGGATGAAGCCAAAGGCCAGCAGTCAGCCAAAGGCCAGAAGTTAGCTTCACAGATAAAAAGCTCTACGAACCGTCATTTGCTTAAAAAGCACAAAGGAATGAGCACCGTCGAAAACAAGAGACGTCGGTGCAAGATTTGTAAAGCCATAGTTACAATTGCAGACGTTCAACACATGCAGAACCATAAAACTGGCAAATTTAAGTGCGAAATTTGCAACATTCGATTTGCACAACGGTCGTTCGTTTGGCATCAAAGACGTTTTCATCCGGAGATAGACATTCACAAATGTACCATTTGCAAGGCCAATGTACCTGACTCAAAAACGAAGCaaCGACATCTGCTAATCCACAAAATTGGCGAAGTGAAATGTGAGGTGTGCGACATTCGCTTCACACCCCCGTCTCTACTGATGCACCAAAAGAAATTCCATCCAGATCTTCCGCGACTGTTAATTATGAAACAGGCGTGCAACGTctgcaaaatcatttgtcgCAGCAAAGCGGCTTTAGACCATCACGACGATATGCACGCAAATGGTGAATTCAAATGCGAAGTCCATCAGATTCGATTCACATTCGAAGCCCTGCAAATTCACAACAAGCGTTGGCATGGTAAATCGATTGTAACGTGTCCAACTTGTAAATTTAGATTTGCCAACGCCGAACATCTTGAGCGACACAAGAAGGTGCACGTCATTGGCAGTGTCAAGTGTGAAATATGCGATATTCCATTCACCAGCTGCTCGTTGGTCTATCATCAGAAAATGTTCCATCGTGAGTTATACCATGGCGTTTTGCGGGCCGAACGAATGCGCAGGCAGAAACTACGAGCAAACCGCAGTCAACGCCAAAAAATTATCGCATCCCATCGTTTTCGGTGCACCTATTGCAAGTTATCCTATGACGATCCCAAGAAGCTGGAGATTCATACTGCTGTTCATACCGATGGAGATGTCGAGTGCCGTATTTGTAAAGTTAGATTTACCAAAACTTCGCTGTTATTTCACGAGAAACGTTTCCATCCGGACGCCCAGAGAAAGGAACGCATTTTGAAAGCCATTCATCGACATATATCGGATGAGCTACAAGGACTCAATGAGTTGGAGTCGAAAGACATTCCGATCATTTTAGAGGACCAATACAAGCAACTGAAGGCGGAAAATAATTCGAACGCGCAGTGCGTAATTTGCAAATTACCATGTGGCGATGGCAAACAACTCGacAGACACATAACGGTGCACATCGAAGGTGATTATAAATGCGAAATATGCTCCGTGTGGTTCACCAAAAATTCGCTAGAATTTCaccaaaaacgttttcatCCTGAATTCTATGAGGAACGTGTTGCCAACGGGATCAAATTGATGAAAGAGCATGGTGACGATGTCAAAGTGAATGAATTTTCGGAGAAAAAGACccttaaaaatttgaatcaacAATGTGACATTTGCAAAGTATACGCTGGAACTGGCGAGCGGTTGGagGAACATAAGCGCACCCACATTACTGGTGATGCCGAATGTAAGATCTGTAACATTCGATTCACGACGACGGCCCTTCGATATCATCAGAAACGTTACCATCCATCGGACTACATTCCACAATCTCATGAACACAAATGCACTGTGTGCACATTGACATGTATGGATCCCAAACAATTGGAGACCCATATGACCGTACACACCGAAGCTGATACTCAGTGTGACATTTGCAATATTCCATTTACAGTGCCCTCGTTACGTTACCATATGAGACGCTTCCATGCGGATACGAATTCGGTTTCAACACAACTTTTACAGAAAGCGCTTCAAAGGAATAAGATCGAGGCATCAGAGAATGCACTGAATCCGTTGAACAGAAATCAATGCCCCATTTGCAATTTAAATTGTGACGGAAAGAAATTCGATGTCCACATCAAAGTTCACATTGACGGCGACGTACAGTGCTCGGTTTGCCAAACTTGGTTCACGCCTTTATCTCTTGATTACCACTACAAGCGCTTCCATCCGCACTTATACGTTGCCAAGGAAACCCGGAGTGAAACGCAATACCAGtgcaatttttgcaaattggTGTCGCAGGACGAAACTAGACTGAAGGAACACATGAAGGTCCATCGAGGTAATGTAAAATGTGACATCTGTAACATACCGTTTACCAAACTATCGCTGATCTATCACTACAAACGATTCCATCTGAATGTGACGGAGAAGGAACGGATTTTAAAGTCCATCGAAAATTCGGCGCCCAGAAAGAATCTTCATAATTGTACCAAATGTATGAACGATTCTTCACACGAAATCTGTTACCATCGCAACGCAGTTGAATCTGTGGAGATACCATTTTCCTTCGGTAGTCTATTGGATGCAGATCGTGAACCTATAGACTTCCCACCACTTCTCAGTACTCCATTAAGTGTGGAacaggattctgatgaaagcAATCAGGTTGTTGCAATTGTCAAAAGACGCAACTACGAATGTTATGTGTGCAAAGaaccattcaaaattgcaTACCAACTGCAGGACCACTTAGCCAAACATATTGTCTACGAGCAATGGGTCGATCCGTCGAATGTTTATCTATCGAATTGGGATCCTGATGAATTGAGCGAAATAATATCGGAACAGCCGATAGTGATGGTGGAGAACATGCggaacataaatttaaaaatgttggcTGGCGGACCGAATAAAAATTGCGTGGATAAACTACAAGAtgtcaatgaaaatttgaccGAAACGGATCTACCAAACACTGTGAAGAATGACTGTACAGTTGATCCGGACACGACACAAAATCATTGTGACGATGTGGTTGAGATATTATCGGAATCCGAGGATGAGTACgaaaccattcaatatcagTTGAATAAGAAACCAAAGCTGCCGTTTCAACCGGAGTTTCCGGGAACAGAGAATGACGCCAATGAGCCAGTGTACATTTCGTCGGATGACGAGGACAATTACGAGATGGATGTAACCGATACGTTTCACTGTTATTTTTGCAACGGGCGATTCGTAACGTTGGCTCAGTTCGGAGAGCACGGAAAAATTTGCCATATGAAAGGGGAACCGGATTTTTAG
- Protein Sequence
- MKFYCKICNKIFKKFVLFEGHFDFSDECRDKQKSFIECYICNKNFRTSAALKYHIQQHTIKRAKNVTSMKKPQVAKIVRKPVIPKITLKKQWNFKVEPHGVGVDAKNVVPKSPQLECKICGNKFQNLLHLAQHSTEHEKKEGHASSPQTVQENGKRKSEDIESVTSAPITTTKSSVKLHRNQCSVCKIVLRHGGARLVRHMQIHVDGKHKCNVCNIKFSQVSLFWHKKYFHQKQNQSELLADEAKGQQSAKGQKLASQIKSSTNRHLLKKHKGMSTVENKRRRCKICKAIVTIADVQHMQNHKTGKFKCEICNIRFAQRSFVWHQRRFHPEIDIHKCTICKANVPDSKTKQRHLLIHKIGEVKCEVCDIRFTPPSLLMHQKKFHPDLPRLLIMKQACNVCKIICRSKAALDHHDDMHANGEFKCEVHQIRFTFEALQIHNKRWHGKSIVTCPTCKFRFANAEHLERHKKVHVIGSVKCEICDIPFTSCSLVYHQKMFHRELYHGVLRAERMRRQKLRANRSQRQKIIASHRFRCTYCKLSYDDPKKLEIHTAVHTDGDVECRICKVRFTKTSLLFHEKRFHPDAQRKERILKAIHRHISDELQGLNELESKDIPIILEDQYKQLKAENNSNAQCVICKLPCGDGKQLDRHITVHIEGDYKCEICSVWFTKNSLEFHQKRFHPEFYEERVANGIKLMKEHGDDVKVNEFSEKKTLKNLNQQCDICKVYAGTGERLEEHKRTHITGDAECKICNIRFTTTALRYHQKRYHPSDYIPQSHEHKCTVCTLTCMDPKQLETHMTVHTEADTQCDICNIPFTVPSLRYHMRRFHADTNSVSTQLLQKALQRNKIEASENALNPLNRNQCPICNLNCDGKKFDVHIKVHIDGDVQCSVCQTWFTPLSLDYHYKRFHPHLYVAKETRSETQYQCNFCKLVSQDETRLKEHMKVHRGNVKCDICNIPFTKLSLIYHYKRFHLNVTEKERILKSIENSAPRKNLHNCTKCMNDSSHEICYHRNAVESVEIPFSFGSLLDADREPIDFPPLLSTPLSVEQDSDESNQVVAIVKRRNYECYVCKEPFKIAYQLQDHLAKHIVYEQWVDPSNVYLSNWDPDELSEIISEQPIVMVENMRNINLKMLAGGPNKNCVDKLQDVNENLTETDLPNTVKNDCTVDPDTTQNHCDDVVEILSESEDEYETIQYQLNKKPKLPFQPEFPGTENDANEPVYISSDDEDNYEMDVTDTFHCYFCNGRFVTLAQFGEHGKICHMKGEPDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246632;
- 90% Identity
- -
- 80% Identity
- -