Bcop015602.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NW:2953042-2955071[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.011 0.47 10.9 4.4 1 21 240 260 240 262 0.94 2 8 1.6e-05 0.0007 19.8 1.0 1 23 268 291 268 291 0.97 3 8 1.2e-05 0.00051 20.2 0.4 1 23 299 322 299 322 0.97 4 8 2.5e-05 0.0011 19.2 0.2 3 23 330 351 329 351 0.93 5 8 0.016 0.69 10.3 3.6 2 23 360 381 360 381 0.98 6 8 0.0017 0.072 13.4 0.5 1 23 390 413 390 413 0.96 7 8 0.0015 0.064 13.6 0.7 1 23 418 441 418 441 0.92 8 8 1.1e-05 0.00047 20.3 1.3 1 23 447 470 447 470 0.97
Sequence Information
- Coding Sequence
- atgaattcaaattcGACACAACTTTGCCGTTTATGTCTGGAAACTAGTGGCAGTTTagtaaacattttcgaaacgtaTCAAGACTCAACCGTTGCTTCTGTTCTGGCCAAACATTTCTGGTTTCAGATTAATAAGGATGACAACATGCCGGAATGGGTGTGTGAAATATGTTGGAGCCAAACGAAAACCTTTCACCATTTCTACAAGCGACTGGAGTTGCGCCATGGGAATTACTTCAACTCAATCGTTTTGGTTGATCAAAAAAAGCAAGAGCGAGGTGTCAGTCCTATAGAGGGAGCGGTGGAAGCTGTTCTTTTTGTAGATAACTGCGAAAGAGAAACGGATGTTACAATGAAGACTGACGAAACGGAGACACCATGCATGGAAAACAGTTGTGATGAAGATGACGACGAGAAAAGCGGCGATCAAaGCGAAGGAGAGCAAACCATTGACAATGATAACGAGCCTTCCCTTGATAAGCCTAGCAGATATTTTCATAGTTCATCTGAGATAGAGAAACAGGACGCAGAGATTCGCAAATTTTTTACGATGAAATGCGAAATTTGCAGTGACGTCGAATTCGACACTTTAAAAAAAGGGAGAAAACATTACCGCCAAGTTCACCAAACAAAAGGCTATTTGATCTGCTGTGGAAATAAGTATCGCAAACGCGCCTTAATACTGGACCATATCCAGTATCATGGTAATCCAGACGCACACCGATGTGACCAGTGTGGTAAAAGTTATAGAAACAGACAGATATTGAGTGCTCACATGAAATGTCACGAGCGCTCCCATGCCTATAAATGCAGCTTGTGTCCAAAAACTTACATATCTTCATCGATGCTGAACTATCACGTTCGAGAAAAGCATTCCACGGATACGAGCGATAAATTTCCTTGCGAGCGGTGTGACATAATttttccgACAAGGTCCAAACTGAGCAGACACTTGAAAACCGTTCATGGCCCCCCTATAAATAACATATGTGAAGCATGCGGTAGATCATTCAAAAGTAAAAGCGATTTGAAATATCACATAGAATTGGAACATTCAACAACACCGCTGACCAAAGCTCAATGCAACATTTGCGGTACTTGGGTGAAGCATCAGCGTTATCTTCGGCACCATTTAAAAATACACCAAGAAAAGCAGGAAGGGAAAGTTTACAATTGTCCGATTTGCAAGAAAAAGATAcagagcaaaaaattgttgtccGCACATGTTCAAAGTTCTCATAGCGAGAAAAAACATCAgTGCACATTTTGCGACAAAGCATTCAGAAAGGCTTACATCCTAAAGGAACACATAGCAGCACTTCACACCGGTGAAGATTTGTACAGTTGTCCGTACTGCGATAGAACGTTCAAATCGATTGCGAACATGTACAATCATCGGAAGAAGGCCCATGTAGCAGAATGTACTAGGTCCAAAGCCGAAAGAGATCGGCAGGCTAATGAAACCGAAGCAGTAGCTAAATTGGTAGATgatgaataa
- Protein Sequence
- MNSNSTQLCRLCLETSGSLVNIFETYQDSTVASVLAKHFWFQINKDDNMPEWVCEICWSQTKTFHHFYKRLELRHGNYFNSIVLVDQKKQERGVSPIEGAVEAVLFVDNCERETDVTMKTDETETPCMENSCDEDDDEKSGDQSEGEQTIDNDNEPSLDKPSRYFHSSSEIEKQDAEIRKFFTMKCEICSDVEFDTLKKGRKHYRQVHQTKGYLICCGNKYRKRALILDHIQYHGNPDAHRCDQCGKSYRNRQILSAHMKCHERSHAYKCSLCPKTYISSSMLNYHVREKHSTDTSDKFPCERCDIIFPTRSKLSRHLKTVHGPPINNICEACGRSFKSKSDLKYHIELEHSTTPLTKAQCNICGTWVKHQRYLRHHLKIHQEKQEGKVYNCPICKKKIQSKKLLSAHVQSSHSEKKHQCTFCDKAFRKAYILKEHIAALHTGEDLYSCPYCDRTFKSIANMYNHRKKAHVAECTRSKAERDRQANETEAVAKLVDDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -