Basic Information

Insect: Bradysia coprophila
Gene Symbol: -
Assembly: GCA_014529535.1
Location: NW:3605065-3607560[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.027 1.2 9.7 1.1 1 23 30 52 30 52 0.98

2 13 5.1e-05 0.0022 18.2 0.8 2 23 149 170 148 170 0.96

3 13 0.0055 0.24 11.8 2.3 1 23 319 341 319 341 0.97

4 13 0.075 3.2 8.2 1.1 2 23 351 373 350 373 0.93

5 13 7.2 3.1e+02 2.0 1.8 1 23 379 403 379 403 0.74

6 13 0.16 6.7 7.2 0.9 2 21 438 457 437 460 0.93

7 13 0.00023 0.01 16.1 0.5 2 23 468 489 467 489 0.96

8 13 9.8 4.2e+02 1.6 0.4 1 23 528 551 528 551 0.81

9 13 0.00014 0.0058 16.9 2.1 1 23 595 617 595 617 0.98

10 13 4.5e-05 0.0019 18.4 0.7 1 23 623 645 623 645 0.97

11 13 6.3e-07 2.7e-05 24.2 0.5 1 23 650 672 650 672 0.98

12 13 1.3e-06 5.5e-05 23.2 1.1 1 23 678 700 678 700 0.98

13 13 0.19 8.1 7.0 2.7 1 23 705 728 705 728 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.027	1.2	9.7	1.1	1	23	30	52	30	52	0.98
2	13	5.1e-05	0.0022	18.2	0.8	2	23	149	170	148	170	0.96
3	13	0.0055	0.24	11.8	2.3	1	23	319	341	319	341	0.97
4	13	0.075	3.2	8.2	1.1	2	23	351	373	350	373	0.93
5	13	7.2	3.1e+02	2.0	1.8	1	23	379	403	379	403	0.74
6	13	0.16	6.7	7.2	0.9	2	21	438	457	437	460	0.93
7	13	0.00023	0.01	16.1	0.5	2	23	468	489	467	489	0.96
8	13	9.8	4.2e+02	1.6	0.4	1	23	528	551	528	551	0.81
9	13	0.00014	0.0058	16.9	2.1	1	23	595	617	595	617	0.98
10	13	4.5e-05	0.0019	18.4	0.7	1	23	623	645	623	645	0.97
11	13	6.3e-07	2.7e-05	24.2	0.5	1	23	650	672	650	672	0.98
12	13	1.3e-06	5.5e-05	23.2	1.1	1	23	678	700	678	700	0.98
13	13	0.19	8.1	7.0	2.7	1	23	705	728	705	728	0.97

Sequence Information

Coding Sequence: ATGGAGGAAAATGAATTCAGACCGGCTGCAACTAAAGATATGGACAAATGTGCCATCATTTATCGGAGTAATTCGGTTTCGTTTGTTTACGTTTGTTTTCACTGTGGATCTGACTTTAACAACATTGATAGCACCTTAAAACATATCGAGTCTCACTTTCAACTAGAGCAGATTACAATCGACGAAAAAGGCGTCAAGTCCGAATTTACGGATTTTGAAAATGCTTCCGATGACACGCATGAAACTGATAACTTTTATGATGCTACCGAGCCCGCAATTCAGATTAAAACGGAAGTGATGGAAGTTGAGGAAGAATATGGCCCTGACACTGATGCTGTAGAAAGACCAACATATTTCAATTGTAAGCGCTGTGCGTCGACTTTTTCATCAAAGTTTTCCTGTCAGAGTCATACGGTAAAGGTTCACTTCAAAGAACCAGCTCTTGAATgtggaaaatgtggaaaaacgTTTAAGCGCGACGCATCCATCAAAAACCATCTGAGACAACACATTGATCGTGGCGAGGTCGATTGGAAATGTGAAGGCGATGGGATTCGTGAACCGAATACCGTACTTTCGAAGCAACAAGAAGACGCAAGGTCGTCAACTGAATTGAAAACTCGGTCCGATAAGCAACAGATGACTAATCGAAATTCATTAAAGCTGATGCCTGAGAAAGAAGAGCCAGAAGACGAAAAtgctgaaaaacaaaaacccgagaaacgaaaaacagaaaaacccAAACCGGTCAAGACAGAAAAACCGAAGTCGGAAAAACGAAAAGCAGAAAAACAGAAGCcggaaaaacgaaaatcggaaaaactgATGCCAGACAAGGAAGAAAAACCGAAGCCAGACAACACAGAAAAACCGGAAAAGCGAAAGGCAGAAAAACAGAAGCCAGACAAAGCAACCAAacctgaaaaagaagaaaaagtatACCAGCTGAGTACATACATTTGCCACAAATGTTCTGACACATACAACACATCAACTGATCTGAACGAGCACTTAAAATTGCATGCGACGGGCGACATTCTCCAAATAAACAAGTGTAAAGAGTGCAAAATCTTCTACCATTCGGCTTTCGATCTTCGCCTGCATGTGCTCGAAATTCACCTTTCCATAAAGGAGTTCAAGTGCTCTACATGTCTGATCGAATTCAAGAAGGAAGACAAAGACTTACTAGAGAAACATTTAGAACTTCACTTAGCAAATAACTCAACAAAATGGGTGAACATACGACATGGCATTTGTAACAACGGATTGGATGCGACGAATTTCGAAGAAATTACTACCACCGCTGAATCGTCTTGCGATTTGtgtgaagaaaaattttatctgaaAGCCAATTTGGCTGAACATGCGCGATGCATGCATTGGGACAACGAAAGTAAACTACGCTGTCCGAAATGTGAAGCTGTATTCACCAAAAACAAAAACTATTTCGCCCATCAACTGGAACATCGTCGATCCGGAGAGGATGTAATTGAAACCGACATGAAGGTGCTCCTTGCAAATCTCAATTCGTACATTGACGAGCAGTTTGTGTGCAATGAAGTTGAAAACGCTTCTAGTCCGTACAAATGTTTAATTTGTAATAGCGAAAAAGTGGATCTGTCGAAAATTAAGACACACGTTCGGGAACAACATGTCTACAAGACCTTACCACAACCGATAAAGCCAATTTTGAAGGAGAAAATAGCCTGCAATCTCTGCGGTATGCTGATCACGCGTAACAGCTTCAGAACTCACTTCTTGGCCCATGTGGACGCGAAAAAGTATCCATGCTCGTTTTGTGGTCGCGTGTtcagcaaaaattattctaagaAAACTCATGAACGTATGCACACGGGTGAGAAACCCTTTCAGTGCGATCAATGTGGTAAACGATTCTTTAGCAATTCATTGCTGGGTGCTCATAAGCAAGCACATGACAATACCACATATCCATGCAAAATCTGTGGCCGAGTCTTCAATATATCATCTGGATATCGCCGTCACATGCAGACTCACCGCAAGGATCAATCATTTGAGTGTACCATttgtggaaaatcttttaacGCACGAGTATATTTGAAGAGACACTTGAACAAACACAACGCGAAAACGTTTCAATGCTCGTTCTGTGAGAATAAATTCAACACGGAAAAGGGACAGCGACAGCATGAGAAAACCCAACATAATCATGAGCCGCcaatataa
Protein Sequence: MEENEFRPAATKDMDKCAIIYRSNSVSFVYVCFHCGSDFNNIDSTLKHIESHFQLEQITIDEKGVKSEFTDFENASDDTHETDNFYDATEPAIQIKTEVMEVEEEYGPDTDAVERPTYFNCKRCASTFSSKFSCQSHTVKVHFKEPALECGKCGKTFKRDASIKNHLRQHIDRGEVDWKCEGDGIREPNTVLSKQQEDARSSTELKTRSDKQQMTNRNSLKLMPEKEEPEDENAEKQKPEKRKTEKPKPVKTEKPKSEKRKAEKQKPEKRKSEKLMPDKEEKPKPDNTEKPEKRKAEKQKPDKATKPEKEEKVYQLSTYICHKCSDTYNTSTDLNEHLKLHATGDILQINKCKECKIFYHSAFDLRLHVLEIHLSIKEFKCSTCLIEFKKEDKDLLEKHLELHLANNSTKWVNIRHGICNNGLDATNFEEITTTAESSCDLCEEKFYLKANLAEHARCMHWDNESKLRCPKCEAVFTKNKNYFAHQLEHRRSGEDVIETDMKVLLANLNSYIDEQFVCNEVENASSPYKCLICNSEKVDLSKIKTHVREQHVYKTLPQPIKPILKEKIACNLCGMLITRNSFRTHFLAHVDAKKYPCSFCGRVFSKNYSKKTHERMHTGEKPFQCDQCGKRFFSNSLLGAHKQAHDNTTYPCKICGRVFNISSGYRRHMQTHRKDQSFECTICGKSFNARVYLKRHLNKHNAKTFQCSFCENKFNTEKGQRQHEKTQHNHEPPI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246642;
90% Identity: iTF_00246642;
80% Identity: -